Detailed information NTG0923100

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: AB3422_RS06790
• Genome accession: NZ_CP162463
• Coordinates: 1383925..1385007 (+)
• Length: 360 a.a.
• NCBI ID: WP_001548033.1
• Uniprot ID: A0A0H2XJ41
• Organism: Staphylococcus aureus strain TUM20888
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1378925..1390007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3422_RS06770 (AB3422_06770)	-	1379297..1380367 (-)	1071	WP_000460983.1	GGDEF domain-containing protein	-
AB3422_RS06775 (AB3422_06775)	-	1380685..1381740 (+)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
AB3422_RS06780 (AB3422_06780)	-	1381910..1382551 (-)	642	WP_000192947.1	YigZ family protein	-
AB3422_RS06785 (AB3422_06785)	fakB1	1382695..1383561 (+)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
AB3422_RS06790 (AB3422_06790)	comFA	1383925..1385007 (+)	1083	WP_001548033.1	DEAD/DEAH box helicase	Machinery gene
AB3422_RS06795 (AB3422_06795)	-	1385000..1385674 (+)	675	WP_001057965.1	ComF family protein	-
AB3422_RS06800 (AB3422_06800)	raiA	1385735..1386307 (+)	573	WP_000617735.1	ribosome-associated translation inhibitor RaiA	-
AB3422_RS06805 (AB3422_06805)	secA	1386721..1389252 (+)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
AB3422_RS06810 (AB3422_06810)	-	1389294..1389398 (+)	105	WP_001790092.1	hypothetical protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42111.65 Da
• Isoelectric Point: 9.8307

>NTDB_id=923100 AB3422_RS06790 WP_001548033.1 1383925..1385007(+) (comFA) [Staphylococcus aureus strain TUM20888]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=923100 AB3422_RS06790 WP_001548033.1 1383925..1385007(+) (comFA) [Staphylococcus aureus strain TUM20888]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

3D structure

• AlphaFold DB: A0A0H2XJ41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367