Detailed information NTG0092306

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU90_RS07440
• Genome accession: NZ_AP025508
• Coordinates: 1671623..1673047 (-)
• Length: 474 a.a.
• NCBI ID: WP_017091224.1
• Uniprot ID: A0A7W4C9H0
• Organism: Vibrio splendidus strain LMG 19031
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1666623..1678047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU90_RS07415	-	1667109..1667762 (+)	654	WP_061025256.1	thiopurine S-methyltransferase	-
OCU90_RS07420	purT	1667957..1669132 (-)	1176	WP_061025253.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU90_RS07425	cdd	1669300..1670187 (-)	888	WP_061025249.1	cytidine deaminase	-
OCU90_RS07430	-	1670546..1671223 (-)	678	WP_061025247.1	LrgB family protein	-
OCU90_RS07435	-	1671226..1671597 (-)	372	WP_004734867.1	CidA/LrgA family protein	-
OCU90_RS07440	sbcB	1671623..1673047 (-)	1425	WP_017091224.1	exodeoxyribonuclease I	Machinery gene
OCU90_RS07445	-	1674072..1674506 (+)	435	WP_004734871.1	DUF4402 domain-containing protein	-
OCU90_RS07450	-	1674559..1674996 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
OCU90_RS07455	-	1674993..1675703 (+)	711	WP_061025245.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54626.88 Da
• Isoelectric Point: 4.8684

>NTDB_id=92306 OCU90_RS07440 WP_017091224.1 1671623..1673047(-) (sbcB) [Vibrio splendidus strain LMG 19031]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92306 OCU90_RS07440 WP_017091224.1 1671623..1673047(-) (sbcB) [Vibrio splendidus strain LMG 19031]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCAGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAGGTAACGCGTTACACCTGCTACCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATTTATTAGATGTAATGCGCGCTGTTCATGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCACACGATGCGATGGCCGATGTTATTGC
AACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTCGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATTGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTATGACGGTTTCTTCTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAAAGCCGTTTAGAAGAGTACATGCTAAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A7W4C9H0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766