Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU90_RS07340 Genome accession   NZ_AP025508
Coordinates   1652849..1654030 (-) Length   393 a.a.
NCBI ID   WP_061025278.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647849..1659030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS07325 - 1648310..1649212 (+) 903 WP_061025285.1 Vmh family MBL fold metallo-hydrolase -
  OCU90_RS07330 - 1649510..1650325 (+) 816 WP_061025283.1 TauD/TfdA family dioxygenase -
  OCU90_RS07335 - 1650581..1652629 (+) 2049 WP_061025280.1 response regulator -
  OCU90_RS07340 cqsA 1652849..1654030 (-) 1182 WP_061025278.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU90_RS07345 - 1654347..1655729 (-) 1383 WP_061025276.1 PLP-dependent aminotransferase family protein -
  OCU90_RS07350 - 1655833..1656729 (+) 897 WP_061025274.1 EamA family transporter -
  OCU90_RS07355 - 1656935..1657945 (-) 1011 WP_061025271.1 GTP-binding protein -
  OCU90_RS07360 - 1657935..1658495 (-) 561 WP_017092536.1 carbonate dehydratase -
  OCU90_RS07365 - 1658558..1659013 (-) 456 WP_004734850.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43664.80 Da        Isoelectric Point: 6.4463

>NTDB_id=92305 OCU90_RS07340 WP_061025278.1 1652849..1654030(-) (cqsA) [Vibrio splendidus strain LMG 19031]
MSDKTKTKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPKPNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDVQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPSTPVYIDFFAHMSLWEGIRAASALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92305 OCU90_RS07340 WP_061025278.1 1652849..1654030(-) (cqsA) [Vibrio splendidus strain LMG 19031]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAGCATTTGGTTTTGGGCAAACGACCTAAGCCCAACGCTGTTGTCATGCAGAGCAATGATTACC
TAGCGCTGTCACACAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCT
GCAATTTTCTTACAAGATGTGCAGTCTAAACCTGCGTTCGAAACTGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCTGCTAATATTGGGCTATTGCAAACCATCTGCCCACCGAGCACACCGGTGTACATTGACT
TCTTTGCACACATGTCGCTTTGGGAAGGCATTCGCGCTGCAAGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGTTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGACTCGGTTTACAGCACAATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGTGAAAATGGAGCTGGCTTAGTTCACGCATTGGGTCTCACTAATCAAGTCGACTTCATTACCGTCAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCTATTCTTGGGCCGAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGCGCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTTACTACCGGTCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATCGTGGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGTGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCGGTCAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAGTTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.072

98.473

0.552

Multiple sequence alignment