Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   AB3423_RS10445 Genome accession   NZ_CP162461
Coordinates   2092274..2093425 (-) Length   383 a.a.
NCBI ID   WP_341264495.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20913     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 2087274..2098425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3423_RS10425 (AB3423_10425) - 2087670..2088467 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  AB3423_RS10430 (AB3423_10430) - 2088641..2088856 (+) 216 WP_000026308.1 hypothetical protein -
  AB3423_RS10435 (AB3423_10435) rny 2089153..2090712 (-) 1560 WP_001050913.1 ribonuclease Y -
  AB3423_RS10440 (AB3423_10440) recA 2091066..2092109 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  AB3423_RS10445 (AB3423_10445) cinA 2092274..2093425 (-) 1152 WP_341264495.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  AB3423_RS10450 (AB3423_10450) pgsA 2093652..2094230 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3423_RS10455 (AB3423_10455) - 2094264..2094656 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  AB3423_RS10460 (AB3423_10460) - 2094675..2095502 (-) 828 WP_000214890.1 YmfK family protein -
  AB3423_RS10465 (AB3423_10465) - 2095607..2096311 (-) 705 WP_000646231.1 SDR family NAD(P)-dependent oxidoreductase -
  AB3423_RS10470 (AB3423_10470) - 2096311..2097597 (-) 1287 WP_000664780.1 pitrilysin family protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43339.61 Da        Isoelectric Point: 6.0542

>NTDB_id=923047 AB3423_RS10445 WP_341264495.1 2092274..2093425(-) (cinA) [Staphylococcus aureus strain TUM20913]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAESHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=923047 AB3423_RS10445 WP_341264495.1 2092274..2093425(-) (cinA) [Staphylococcus aureus strain TUM20913]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGAAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431