Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV12_RS24100 Genome accession   NZ_AP025507
Coordinates   1853796..1854890 (-) Length   364 a.a.
NCBI ID   WP_239829259.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848796..1859890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS24080 - 1849562..1849870 (+) 309 WP_261886432.1 DUF1289 domain-containing protein -
  OCV12_RS24085 - 1849964..1850314 (-) 351 WP_261886433.1 HopJ type III effector protein -
  OCV12_RS24090 - 1850509..1851168 (+) 660 WP_261886434.1 PilZ domain-containing protein -
  OCV12_RS24095 luxQ 1851229..1853796 (-) 2568 WP_261886435.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV12_RS24100 luxP 1853796..1854890 (-) 1095 WP_239829259.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV12_RS24105 - 1855199..1855513 (-) 315 WP_261886436.1 GIY-YIG nuclease family protein -
  OCV12_RS24110 - 1855514..1856170 (-) 657 WP_146490046.1 YceH family protein -
  OCV12_RS24115 - 1856234..1856434 (-) 201 WP_017630496.1 hypothetical protein -
  OCV12_RS24120 - 1856630..1856944 (+) 315 WP_004742367.1 DUF496 family protein -
  OCV12_RS24125 - 1857097..1857723 (+) 627 WP_261886437.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV12_RS24130 - 1857894..1858130 (+) 237 WP_017075851.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41277.55 Da        Isoelectric Point: 5.2959

>NTDB_id=92296 OCV12_RS24100 WP_239829259.1 1853796..1854890(-) (luxP) [Vibrio pomeroyi strain LMG 20537]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSKFPEQKILTDKMVEAVQNHPVPLRRPQDRPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLTQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKEVSQPDSKYSVLYRSEGYISDARGDTFIHEVNTDTNFALKSSFYTKSD
KETGYQAAKISIANDKDLDFIYACATDVALGAAEAIRESGRDILVNGWGGGSAELEALARGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEVVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92296 OCV12_RS24100 WP_239829259.1 1853796..1854890(-) (luxP) [Vibrio pomeroyi strain LMG 20537]
ATGAAACGTTTACTGATGTTGTTTGGACTTGCCGTATTTTCTGCATCCGCTCTCTCCCATGGTACTCATGTCCTCAATGG
GTACTGGGAATACCAAGATTATCTTTCCAAGTTTCCAGAACAAAAAATATTGACCGATAAAATGGTCGAAGCTGTGCAAA
ACCACCCAGTGCCATTGAGGCGACCTCAAGATCGACCGATCACGATCTCGGTTGTGTATCCAGGTCAACAGATCTCTGAT
TATTGGGTTCGTAATATCCAAGCGTTTGAGAAGCGCCTTGATAAACTGAGAATTAACTATCAGATAAATCAGGTATTTAC
TCGTGTTAATGCCGATCTCACTCAGCAAAGTATTTCTTTGCAAGAGGCGATCGAGAACAAAACGGATTACTTGATCTTTA
CCTTAGATACCACGCGGCACCGTAAGTTTATCGAACATGTGTTGAGTTCTACCGATACTAAGCTGATCTTGCAAAATATC
ACCACACCGGTACGTGCTTGGGCAGATAGACAGCCATTTATGTACGTGGGTTTTGACCACGCGACAGGCAGTTTAAAACT
GGCAGATTATTTTAAAGAAGTGAGTCAACCAGACAGCAAATACTCTGTGTTGTACCGCTCTGAAGGTTATATCAGTGATG
CTCGTGGAGATACCTTTATCCATGAAGTGAACACCGACACCAACTTTGCCCTCAAGTCTTCGTTTTACACAAAGTCAGAC
AAAGAGACCGGCTACCAAGCGGCTAAAATCAGCATAGCGAACGATAAGGATCTAGACTTTATCTATGCATGTGCAACCGA
TGTCGCTCTAGGCGCGGCAGAAGCGATTCGTGAATCTGGTCGAGACATCTTAGTGAATGGTTGGGGAGGCGGTTCCGCTG
AGCTTGAAGCTCTTGCGAGAGGTGACTTAGATGTGACCGTTATGCGTATGAACGACGACACCGGTATTGCGATGGCAGAG
GCGATCAAATGGGATCTTGCTGGGTTGGAAGTTCCTACCGTTTACTCTGGTGAATTTGAAGTCGTGACCAAAGAAGATTC
TCCAGAACGTATTTCAGAACTAAAACAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.388

100

0.637

Multiple sequence alignment