Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV12_RS14920 Genome accession   NZ_AP025506
Coordinates   3362160..3363164 (+) Length   334 a.a.
NCBI ID   WP_017630922.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357160..3368164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS14905 - 3357532..3358821 (-) 1290 WP_048663011.1 malic enzyme-like NAD(P)-binding protein -
  OCV12_RS14910 rpmE 3359155..3359373 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCV12_RS14915 priA 3359718..3361919 (+) 2202 WP_176680541.1 primosomal protein N' -
  OCV12_RS14920 cytR 3362160..3363164 (+) 1005 WP_017630922.1 DNA-binding transcriptional regulator CytR Regulator
  OCV12_RS14925 ftsN 3363287..3363826 (+) 540 WP_017630921.1 cell division protein FtsN -
  OCV12_RS14930 hslV 3364066..3364614 (+) 549 WP_017630920.1 ATP-dependent protease subunit HslV -
  OCV12_RS14935 hslU 3364673..3366013 (+) 1341 WP_176680542.1 HslU--HslV peptidase ATPase subunit -
  OCV12_RS14940 - 3366169..3367086 (+) 918 WP_261884965.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV12_RS14945 rraA 3367160..3367675 (+) 516 WP_176680544.1 ribonuclease E activity regulator RraA -
  OCV12_RS14950 zapB 3367770..3368012 (-) 243 WP_008219652.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36525.09 Da        Isoelectric Point: 6.4911

>NTDB_id=92285 OCV12_RS14920 WP_017630922.1 3362160..3363164(+) (cytR) [Vibrio pomeroyi strain LMG 20537]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVAMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92285 OCV12_RS14920 WP_017630922.1 3362160..3363164(+) (cytR) [Vibrio pomeroyi strain LMG 20537]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACTGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGTAAGCGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCATATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTTCTATTGGGTGACAGCGGTCAGCAAAAGAAGCGTGAGTCTTCCTT
TGTTAACCTTGTCTTCACTAAGCAAGCTGACGGCATGCTACTGCTTGGCACCGACCACCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAACTTACCACCGATGGTAATGGCGTGTGAGTTCGCTCCTGAGCTTGAACTCCCAACAGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCCGTGAATTACCTAGCTCAGTTAGGTCATAAACGTATCGCTCAAATCTCAGGCCCAGTCTC
AGCAACCCTGTGTAAGTTCCGCCAACAAGGTTACCAACAAGCACTGCGTCGTGCAGGTGTGGCAATGAACCCAGCCTACA
GCACAGTCGGCGACTTCACTTTTGAAGCGGGTGCTCAAGCCGTTCGTCAATTACTGGCACTGCCTGAACAGCCTACTGCT
ATCTTCTGTCACAACGATGCGATGGCCATTGGTGCGATTCAAGAAGCGAAAAAGTTAGGTTTACGAGTTCCGCAAGACCT
ATCAATTGTTGGCTTCGATGACATTCAATTCGCTCAGTACTGCGATCCTCCGCTAACCACTATTTCTCAACCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTACTGAAAGGCAATGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCCAAATTAGTGGTTCGAGGCAGTACTGCGCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment