Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV12_RS13450 Genome accession   NZ_AP025506
Coordinates   3090793..3091311 (-) Length   172 a.a.
NCBI ID   WP_017629423.1    Uniprot ID   A0A7Y7N1I2
Organism   Vibrio pomeroyi strain LMG 20537     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3085793..3096311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS13425 rimM 3085807..3086361 (-) 555 WP_017629425.1 ribosome maturation factor RimM -
  OCV12_RS13430 rpsP 3086386..3086634 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV12_RS13435 ffh 3086846..3088240 (-) 1395 WP_010435884.1 signal recognition particle protein -
  OCV12_RS13440 - 3088441..3089235 (+) 795 WP_239848430.1 inner membrane protein YpjD -
  OCV12_RS13445 - 3089363..3090634 (+) 1272 WP_017629424.1 HlyC/CorC family transporter -
  OCV12_RS13450 luxS 3090793..3091311 (-) 519 WP_017629423.1 S-ribosylhomocysteine lyase Regulator
  OCV12_RS13455 - 3091336..3091986 (-) 651 WP_261884868.1 hypothetical protein -
  OCV12_RS13460 gshA 3091997..3093565 (-) 1569 WP_261884869.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.71 Da        Isoelectric Point: 4.5912

>NTDB_id=92272 OCV12_RS13450 WP_017629423.1 3090793..3091311(-) (luxS) [Vibrio pomeroyi strain LMG 20537]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92272 OCV12_RS13450 WP_017629423.1 3090793..3091311(-) (luxS) [Vibrio pomeroyi strain LMG 20537]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTCACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTTGAGCATCTATATGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCT
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACACCAACAGAGCAGCAAGTGGCTGACGGTTGGTTGGCTGC
TATGAAAGATGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCAATCATCGCTGCAGGTATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7N1I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment