Detailed information NTG0922699

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: AB3442_RS06625
• Genome accession: NZ_CP162453
• Coordinates: 1312322..1313404 (-)
• Length: 360 a.a.
• NCBI ID: WP_001548033.1
• Uniprot ID: A0A0H2XJ41
• Organism: Staphylococcus aureus strain TUM20929
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1307322..1318404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3442_RS06605 (AB3442_06605)	-	1307931..1308035 (-)	105	WP_001790092.1	hypothetical protein	-
AB3442_RS06610 (AB3442_06610)	secA	1308077..1310608 (-)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
AB3442_RS06615 (AB3442_06615)	raiA	1311022..1311594 (-)	573	WP_000617735.1	ribosome-associated translation inhibitor RaiA	-
AB3442_RS06620 (AB3442_06620)	-	1311655..1312329 (-)	675	WP_001057965.1	ComF family protein	-
AB3442_RS06625 (AB3442_06625)	comFA	1312322..1313404 (-)	1083	WP_001548033.1	DEAD/DEAH box helicase	Machinery gene
AB3442_RS06630 (AB3442_06630)	fakB1	1313768..1314634 (-)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
AB3442_RS06635 (AB3442_06635)	-	1314778..1315419 (+)	642	WP_000192947.1	YigZ family protein	-
AB3442_RS06640 (AB3442_06640)	-	1315589..1316644 (-)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
AB3442_RS06645 (AB3442_06645)	-	1316962..1318032 (+)	1071	WP_000460983.1	GGDEF domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42111.65 Da
• Isoelectric Point: 9.8307

>NTDB_id=922699 AB3442_RS06625 WP_001548033.1 1312322..1313404(-) (comFA) [Staphylococcus aureus strain TUM20929]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=922699 AB3442_RS06625 WP_001548033.1 1312322..1313404(-) (comFA) [Staphylococcus aureus strain TUM20929]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

3D structure

• AlphaFold DB: A0A0H2XJ41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367