Detailed information NTG0092266

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV12_RS13175
• Genome accession: NZ_AP025506
• Coordinates: 3018979..3022368 (+)
• Length: 1129 a.a.
• NCBI ID: WP_261884843.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain LMG 20537
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3013979..3027368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV12_RS13150	erpA	3014267..3014608 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
OCV12_RS13155	hemL	3014905..3016200 (+)	1296	WP_048605689.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV12_RS13160	-	3016342..3016467 (-)	126	WP_048658168.1	hypothetical protein	-
OCV12_RS13165	-	3016544..3017629 (+)	1086	WP_017633266.1	AI-2E family transporter	-
OCV12_RS13170	rsmC	3017739..3018761 (+)	1023	WP_261884842.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV12_RS13175	chiS	3018979..3022368 (+)	3390	WP_261884843.1	response regulator	Regulator
OCV12_RS13180	-	3023079..3024761 (+)	1683	WP_017633263.1	ABC transporter substrate-binding protein	-
OCV12_RS13185	-	3024931..3025917 (+)	987	WP_017633262.1	ABC transporter permease	-
OCV12_RS13190	-	3025920..3026945 (+)	1026	WP_017633261.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127125.87 Da
• Isoelectric Point: 5.4276

>NTDB_id=92266 OCV12_RS13175 WP_261884843.1 3018979..3022368(+) (chiS) [Vibrio pomeroyi strain LMG 20537]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIPGSGDQIKTSILPESSSYIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVTERRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGSDHLPRSLAHSQESINLSLDVVDKALAGKTAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATEEELKNYNESGSYSHFQAPDLIDNAQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCESLRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=92266 OCV12_RS13175 WP_261884843.1 3018979..3022368(+) (chiS) [Vibrio pomeroyi strain LMG 20537]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACCTCACACCTTGTTT
CAGTCCGTGATACTAAGCAACAACAAATTGTCGATTACCTTCAAGCTCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCA
GAATTAGCCAATGCCAGTGGCGGCCGATTCTATGGTTTGATCAATGCCTTCCAGCGACTTGGTCTAGATATTGACGAAGC
ACGCAGTAATGCGCAGCAACGCTACATTCCAGGATCGGGCGATCAAATCAAAACATCGATTCTTCCTGAGTCGAGTAGCT
ACATTGGTAGTGAACGTTACCGCCTACTGCACAAGCGCTACCATAACGCTTACCTAGAGCTGCTTAAACGCTCCGATTTT
GACGATATTCTATTGGTTGATATCAATGGCAACGTTGCTTACTCCGTCTTTAAAAATGACGATTACGGCACTAACTTGCT
GACTGGTAAATACAAAGACTCAAACCTAGGCGTTACCTTTCAACGACTAGCTAAAGATGTCACTGAACGACGCAAATCCA
ACGAAGATTACACACCAGTTATTGTATCGGACTTTAAAGACGAGAACGGTAAACAGACGGCATGGCTAGGTGCGCCTATC
GTACAGCAGGGTTACCTACACAGTTATGCCATGTTCAGACTGCCGATCAACGGCATCACCAAACTGATTGCCGATCTAAA
CAAGAGCTCTAACATTCAAACGCTTCTTGTAGGTAGTGATCACTTACCTCGTAGCCTTGCGCACTCTCAAGAGTCGATTA
ACTTAAGCCTAGACGTGGTTGATAAAGCACTGGCGGGCAAAACAGCCGTAGGCACATTTGATAACACTCTAGATCAGGCG
ATTATCGCGGCCTATACACCAATTGAACTCAAGTACGCGACTTGGGCTCTCGTTGTCGAGCTTCCAGAAAAAGAAGCATT
TGCCCGTATTCATCAACTAGAAAAGATCTTCGTGATCGTGATGCTAACCGCGATCATTCTGGTGGTTGTCGCATCGCATT
ACCTCTCTAACTTCATCACCTCACCGCTGCTTAAATTGACATGGGCAGCTGAAAAAGTATCTGCTGGTGATCTTGATGAG
ACGATGATCAACACCGAGCGTAAAGATGAAATCGGTCGCTTGGCGGTCAGTTTTGAACGAATGCAGCGTTCTATTCGTGA
AAAAATGCAGCTCATCAAAAGTCAAAATGATGAACTCGAAGACAACCTCAAGACAATCCAGAAGCAAAACGAAGAGCTAC
AGCTGGCTAACAAACTTAAAGATGAATTCTTAGCGACCACCTCTCACGAATTGAGAACACCACTGCATGGTATGGTTGGT
ATCGCTGAAGCACTGATATCTGGCGCGAATGGTCCTATTCCGGCTAACCAGAAATATCAATTAGATATCATCATCAATAG
TGGTCAGCGATTAGCTACGTTGGTTGATGACCTGCTTGATTACCACAAGATGCGTTACGGCAGCTTAGATATTAAGAAAT
CCGCAGTTGATCTGTCTGCAGCCACCAGCTTAGTGCTTGAGTTATCTCATCACCTACTGGGTAACAAGCCAATCCGTATT
ATTAACCAAGTCCCAAGCGATCTAGGGCTCGTCTCCTCCGACCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTCGG
TAATGCCATCAAGTACACATCCGAAGGTAAGATTGTTATCTCAGCGAGCGTTATCGACGATAACATTCGTGTGCAAGTGG
TCGATACTGGCCAAGGCATACCAGCAGAGTACCTTGAGCACATCTTTGAGCCGTTAATTCAAGCAGGACAAGATGCGAGT
AACTACCGCCAAGGTGCAGGGCTTGGATTATCAATCAGTCGCCAGCTAATCGAGCTAATGGGTGGATCGCTGTATGTAAG
TAGTCAACCGATGCTTGGTACCACGTTCAGCTTTACTTTACCTCTGGCTACAGAAGAAGAACTTAAGAACTACAACGAAT
CAGGCAGCTACTCACACTTCCAAGCGCCTGATTTGATTGATAACGCTCAGCAAGAGAACAGTGTTATCAGTGAGAATCCT
GATGGCCCACTACTGGTTATCGCTGATGATGAGCCAGTTAACCTGCGAGTATTGGACAGCTTCTTGAAATTAGAAGGCTA
TCGAGTACGCACAGCCTGTGACGGACCGGAAACTATTGAATTGATTGAGAAGGAGAAGCCAGAACTACTTCTACTCGACA
TCATGATGCCGGGCATGAGTGGCTATCAAGTGTGTGAATCGCTACGTAAGCAGTATGATCACGCACAGTTGCCAATCATC
ATGCTGACGGCACTCAACCAAGCAGAAGACCGTGTACGCGGTTTCGAAGCGGGTGCTAATGATTACTTATCTAAGCCGTT
CAACAAACAGGAACTGGCTGCGCGAATCACGGCTCACTTATCAGCAAGTAAAGCAGAGCAAAGGCGCCTTGAGAATGACC
AATTGCAACTTGAGCTCAAACACAGAGCCATGGTTGAAGCTAACTTGCTAGAAACTCAAGGACGTTTGCTAGAACAGTTA
GAGTCGGCTCCAGAAGCCATCATCTGTATTCGTGACGATCAGCGTATTCGCTTTGCCAATGAAGCCGCAGCGAAACTGTT
TAGACGCGGACAAGAACAACTTAAGCGCTCTATGGCCGATGAGATCATCGCACCTAAATACCTTAAGGTGGAACAGGCGC
ACTATTGTGGTGATATCGACATCTATATTGACGATACCCGTCAGCGCATACCAAGTGACATCCTCAAGCTGCCAGAAGGT
TCTGGGCTCGACACCATGTACATATTTAATGTTGGTGGTGGCGTTAACTCAAACCGTATCAATAACCTTGAGACGGCCGT
TGAAGCGCTTTCTAGTTATGCCTTTGAAGGTGACAAAGATAAGCTGCAACAACTCAAAGAACTTGGTGGTGAATTTACTC
GCCTTGCTGATAAAGCGACTGGAGAAGGGAAAAACAAGCAAGAATTAATGCGTGAAGTCCTAGTGGATGCCATGACTAAC
GCCATTATCTACTGGGAGTCTGTTACCGGTGAGACCAAGTTTGCTTTCGCAGAAAAGAGTGGGTTGTGGCGCGTCTACTT
AGACCGTAGCACGCTTCAAACGCGAACGTTGGACAAATACCTGCGCGTAGAAACGCTGCCGAAAACACCTCGCTGGCGAA
CGGTATTGAGCTCTATCGAATTCATTCTCGAACACTGCAAAGAGCAAACGCCAGAAAGAACACACATTGAGATGCTCAGA
GACAAGCTACAGAAATTACTGACCAGCTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• PAS domain (PAS_8) (880-914)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	77.059	100	0.771