Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV12_RS11160 Genome accession   NZ_AP025506
Coordinates   2560795..2562183 (-) Length   462 a.a.
NCBI ID   WP_017632950.1    Uniprot ID   A0A4R2FNJ9
Organism   Vibrio pomeroyi strain LMG 20537     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2555795..2567183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS11125 moaE 2556060..2556515 (-) 456 WP_017632502.1 molybdopterin synthase catalytic subunit MoaE -
  OCV12_RS11130 moaD 2556518..2556763 (-) 246 WP_017632501.1 molybdopterin synthase sulfur carrier subunit -
  OCV12_RS11135 moaC 2556760..2557239 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV12_RS11140 moaB 2557252..2557764 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  OCV12_RS11145 moaA 2558121..2559110 (-) 990 WP_029406079.1 GTP 3',8-cyclase MoaA -
  OCV12_RS11150 - 2559446..2560333 (+) 888 WP_261884675.1 YvcK family protein -
  OCV12_RS11155 luxU 2560427..2560771 (-) 345 WP_017632949.1 quorum-sensing phosphorelay protein LuxU -
  OCV12_RS11160 luxO 2560795..2562183 (-) 1389 WP_017632950.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV12_RS11165 uvrB 2562512..2564542 (-) 2031 WP_261884676.1 excinuclease ABC subunit UvrB -
  OCV12_RS11175 melB 2565427..2566800 (-) 1374 WP_261884677.1 melibiose:sodium transporter MelB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51735.28 Da        Isoelectric Point: 6.4047

>NTDB_id=92265 OCV12_RS11160 WP_017632950.1 2560795..2562183(-) (luxO) [Vibrio pomeroyi strain LMG 20537]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92265 OCV12_RS11160 WP_017632950.1 2560795..2562183(-) (luxO) [Vibrio pomeroyi strain LMG 20537]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCAGTCGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATTTTATTAGATTTACGTCTGCCTGATATGACGGGTATGGACGTGCTCTTTGCTGTAAAACAAAAATAC
CCTGAAGTGCCCGTTATCTTCATGACAGCGCACGGCTCTATCGATACTGCCGTAGAAGCGATGCGTCATGGCTCTCAGGA
CTTCCTTATCAAGCCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCGACCAAGCTCAAGA
ACAGCTCTGAACATCCGGGAAACCAGAATTACCAAGGCTTCATTGGCAGTAGTCAAACCATGCAGCAGGTTTACCGAACG
ATCGATTCTGCAGCATCAAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
GATTCACGCGGCTAGCAAGCGTGGCGATAAGCCTTTCATCGCCATCAACTGTGCGGCAATTCCTAAAGACTTGATTGAAA
GTGAGCTGTTTGGCCACGTAAAAGGGGCGTTTACGGGGGCGGCAACCGATCGTCAAGGTGCTGCTGAGCTAGCTGATGGA
GGCACACTGTTCCTCGATGAGCTGTGTGAGATGGATCTTGAACTGCAAACCAAGCTTCTGCGTTTTATTCAAACCGGTAC
TTTTCAAAAAGTGGGCTCTTCGAAGATGAAGAGTGTGGACGTTCGTTTTGTTTGTGCGACCAACCGTGACCCTTGGAAAG
AAGTGCAAGAAGGTCGCTTTAGAGAAGACTTATACTACCGTTTGTACGTGATTCCTCTGCACTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTTATCGAGATTGCATACTCACTGTTGGGTTATATGTCGGTTGAAGAAGGCAAGGCGTTTGTTCGTTT
TGCGCAAGAAGTGTTGGATCGCTTTAACCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTGCGGAATG
TGGTGGTGTTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCACCATTGAATCAGCCGATTGAAAACAGTCTG
CGCCTGAAAGAGAAGCAGAGTGAAGACATCACAGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGATGGCAACATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATATACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2FNJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838

Multiple sequence alignment