Detailed information NTG0092261

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV12_RS06925
• Genome accession: NZ_AP025506
• Coordinates: 1548607..1550031 (-)
• Length: 474 a.a.
• NCBI ID: WP_261885731.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain LMG 20537
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1543607..1555031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV12_RS06900	-	1544247..1544900 (+)	654	WP_261885728.1	thiopurine S-methyltransferase	-
OCV12_RS06905	purT	1545015..1546190 (-)	1176	WP_017069826.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV12_RS06910	cdd	1546358..1547245 (-)	888	WP_261885729.1	cytidine deaminase	-
OCV12_RS06915	-	1547531..1548208 (-)	678	WP_261885730.1	LrgB family protein	-
OCV12_RS06920	-	1548211..1548582 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
OCV12_RS06925	sbcB	1548607..1550031 (-)	1425	WP_261885731.1	exodeoxyribonuclease I	Machinery gene
OCV12_RS06930	-	1550930..1551364 (+)	435	WP_055318636.1	DUF4402 domain-containing protein	-
OCV12_RS06935	-	1551417..1551854 (+)	438	WP_261885732.1	DUF4402 domain-containing protein	-
OCV12_RS06940	-	1551851..1552561 (+)	711	WP_261885733.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54768.06 Da
• Isoelectric Point: 4.8224

>NTDB_id=92261 OCV12_RS06925 WP_261885731.1 1548607..1550031(-) (sbcB) [Vibrio pomeroyi strain LMG 20537]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRDRLYTKRSELSEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHENESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92261 OCV12_RS06925 WP_261885731.1 1548607..1550031(-) (sbcB) [Vibrio pomeroyi strain LMG 20537]
ATGAGTTCAGATAATCAGCCTACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCGAAAGATCGTCCGAG
TCAATTCGCCGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTTCCTGCACCTGAAGCTGCGCTAATCACTCGCATCACACCGCAAAAAGCCATGTCTCAAGGCCTACCTGAGCCT
GAGTTTATCGCCAAGATTCATGCAGAGCTTGCAAAGCCAAACACCACAAGCCTTGGCTACAACAGCATTCGATTCGATGA
CGAAGTAACGCGATACACTTGTTATCGCAACTTCATAGACCCGTACGCATGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATCTACTTGACGTGATGCGCGCCGTACACGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGACGCGATGGCCGATGTTATTGC
GACTATCGAATTAGCGAAAAAGCTGAAAGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAGCGCA
AGTTGAACGAATTAGTCGACATCGTAAACATGACACCTCTTATGCACGTGTCAGGCATGTTTGGTCGTGACTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCGTGGCATCCAACCAATCAAAACGCGGTTATCGTGGTGGACTTGGCAAAAGATCCTAG
CCCTCTGCTTGAGCTAGATACTGATGAGCTAAGAGACAGACTCTACACCAAGCGAAGCGAGCTAAGTGAAGATGAACTGC
CAGTGCCGATTAAACTGGTACAACTCAACAAGTGCCCTATTCTCGCACCAGCAAAAACACTCACGGCTGAAAACGCGGAA
ACGATCGGTATCGACCGTCAGCAGTGCTTAAAGAACCTTGCACTATTACGTGAACACCCAGAGATTCGTGAAAAGCTGAT
TGGCTTGTACTCACAAGAACGTGAATACGAAAAAAGTGATGATGTAGACACACACCTTTACGATGGCTTCTTCTCTCCAG
CAGATAAGACCGCGATGAACATCATCCGTGAAACTGATCCGAACAACTTGGCCGCTTTGGACATCACTTTCAGTGACGAG
CGTATTAAGCCGTTGTTGTTCCGTTACCGCGCTCGTCATTTCCCATGGACACTTGATGAAGCTGAGCAGCTTAAATGGGC
GAACCATTGTCGTGAGTTTTACGAGAGTCGCTTAGAAGAGTACATGCTGAATCTAGAAAACCTCGCACATGAAAACGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764