Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV12_RS06835 Genome accession   NZ_AP025506
Coordinates   1529832..1531013 (-) Length   393 a.a.
NCBI ID   WP_261885719.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524832..1536013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS06825 - 1525575..1527341 (+) 1767 WP_261885717.1 ABC-F family ATP-binding cassette domain-containing protein -
  OCV12_RS06830 - 1527632..1529680 (+) 2049 WP_261885718.1 response regulator -
  OCV12_RS06835 cqsA 1529832..1531013 (-) 1182 WP_261885719.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV12_RS06840 - 1531272..1532660 (-) 1389 WP_261885720.1 PLP-dependent aminotransferase family protein -
  OCV12_RS06845 - 1532765..1533679 (+) 915 WP_261885721.1 EamA family transporter -
  OCV12_RS06850 - 1533946..1534818 (+) 873 WP_261885722.1 aspartoacylase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43707.79 Da        Isoelectric Point: 6.5000

>NTDB_id=92260 OCV12_RS06835 WP_261885719.1 1529832..1531013(-) (cqsA) [Vibrio pomeroyi strain LMG 20537]
MSDKTKNKPLPSFIEERLSFYIQDLITQNQSQKHLVLGKRPSRDSVVMQSNDYLALSHHKAIQQAHQAAISDHDDNVVMS
AIFLQDAESKPAFETKLANYVGMESCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAAAHPFMHNNMS
HLRKQLERHGSGVIVVDSIYSTIGTIAPLRDIYEMAQEFDCAVIVDESHSLGTHGDKGAGLVQALGITEQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKREALFKRAQSLVTGLKRIGFNIRSESQ
IVSLECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDVDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92260 OCV12_RS06835 WP_261885719.1 1529832..1531013(-) (cqsA) [Vibrio pomeroyi strain LMG 20537]
ATGAGTGATAAAACCAAAAACAAACCATTACCTTCCTTTATTGAAGAACGCTTGAGCTTCTATATTCAAGACCTAATCAC
CCAGAACCAAAGCCAGAAACACTTGGTTTTGGGTAAACGTCCATCGCGCGACTCCGTTGTCATGCAAAGCAATGATTATT
TGGCTTTGTCGCACCACAAAGCAATCCAACAAGCTCACCAAGCGGCGATCAGCGACCACGACGACAATGTGGTGATGTCT
GCGATTTTCTTACAAGATGCAGAATCTAAACCTGCGTTTGAAACCAAACTCGCCAACTATGTTGGAATGGAAAGCTGCCT
GCTTTCTCAGTCTGGTTGGGCGGCCAATATTGGGTTACTTCAAACGATCTGTCCGCCAAATACACCTGTGTATATCGACT
TCTTTGCGCACATGTCGCTATGGGAAGGTATTCGTGCGGCCGGTGCGGCAGCTCATCCATTTATGCATAACAATATGAGT
CACTTACGTAAACAACTGGAACGTCATGGCTCTGGTGTGATTGTGGTCGACTCGATTTACAGCACCATTGGTACCATTGC
CCCGCTCCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCTGTTATCGTCGATGAGTCCCATTCATTAGGGACAC
ACGGTGACAAAGGTGCAGGCTTGGTGCAAGCGCTTGGGATCACTGAGCAAGTCGACTTTATCACGGTCAGCTTGGCAAAA
ACCTTCGCTTATCGTGCAGGCGCGATCCTTGGGCCCAAACAACTCTCTGATACTTTGCCGTTTGTTGCTTATCCCGCCAT
TTTTAGCTCAACCGTATTGCCACAAGAAGTGATTCGCTTAGAGAAAACATTAGAGGTAATTAAAGGTGCAGATGACAAAC
GAGAAGCCCTGTTTAAGCGAGCACAGTCGCTTGTTACGGGTCTAAAACGGATCGGCTTTAACATCCGTAGCGAATCTCAA
ATCGTCTCGCTAGAGTGCGGAAATGAAAGAAATACAGAGCGAGTACGCGATTTCCTTGAAGAGCGAGATGTGTTCGGCGC
AGTGTTCTGCCGTCCAGCGACTGGGAAGAATAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACGCCACGCGACG
TTGACCATGTGCTCACGGTTTGTCACGAGGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.331

98.473

0.555

Multiple sequence alignment