Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   vsple_RS16750 Genome accession   NZ_AP025504
Coordinates   571589..572683 (-) Length   364 a.a.
NCBI ID   WP_255232494.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 566589..577683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS16730 - 567316..567624 (+) 309 WP_261883938.1 DUF1289 domain-containing protein -
  vsple_RS16735 - 567703..568047 (-) 345 WP_255232497.1 HopJ type III effector protein -
  vsple_RS16740 - 568293..568952 (+) 660 WP_261883939.1 PilZ domain-containing protein -
  vsple_RS16745 luxQ 569007..571589 (-) 2583 WP_261883940.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  vsple_RS16750 luxP 571589..572683 (-) 1095 WP_255232494.1 substrate-binding domain-containing protein Regulator
  vsple_RS16755 - 572933..573256 (-) 324 WP_261883941.1 GIY-YIG nuclease family protein -
  vsple_RS16760 - 573257..573910 (-) 654 WP_261883942.1 YceH family protein -
  vsple_RS16765 - 573971..574171 (-) 201 WP_255232491.1 hypothetical protein -
  vsple_RS16770 - 574367..574681 (+) 315 WP_032550242.1 DUF496 family protein -
  vsple_RS16775 - 574815..577382 (-) 2568 WP_261884045.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41281.55 Da        Isoelectric Point: 5.2966

>NTDB_id=92250 vsple_RS16750 WP_255232494.1 571589..572683(-) (luxP) [Vibrio pelagius strain ATCC 25916]
MKRSLMLLGASLLSGPAFSHGTHVLNGYWEYQEFLDKFPAQKALTEQMNQAVLSPPVPLQAKQLDPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLTQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTNTKLILQNI
TTPVRAWQERQPFMYVGFDHATGSLKLADYFKTHSRDESEYSVLYRSEGYISDARGDTFIHEISEETDFKLKSSFYTKSD
MESGYKAAKISIERNQDLDFIYACATDVALGAAKAIRESGLDIKLNGWGGGSAELEALARGDLDVTVMRMNDDTGIAMAE
AIKWDLEGFAVPTVYSGDFEVVTKEDSQEHIESLKQRAFRYSGK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92250 vsple_RS16750 WP_255232494.1 571589..572683(-) (luxP) [Vibrio pelagius strain ATCC 25916]
ATGAAACGTTCACTTATGTTGCTAGGGGCTTCGCTATTGTCAGGGCCAGCCTTTTCTCACGGCACTCACGTGCTCAACGG
TTATTGGGAATACCAAGAATTTTTGGATAAGTTTCCAGCACAAAAAGCACTCACTGAACAGATGAACCAAGCTGTGTTGA
GTCCGCCTGTTCCTTTGCAGGCTAAACAGCTTGATCCTATCACCATATCGGTTGTCTATCCTGGTCAACAGATCTCAGAT
TACTGGGTAAGAAATATTCAAGCGTTCGAAAAGCGTTTGGATAAGCTTAGAATCAACTACCAAATCAACCAAGTATTTAC
GCGTGTCAATGCAGATTTGACGCAGCAAAGTATTTCTCTTCAAGAAGCGATAGAGAATAAGACCGATTATCTGATTTTCA
CACTTGATACAACTCGCCATCGTAAATTTATTGAGCATGTTTTGAGCTCAACCAATACCAAGCTGATTTTGCAAAATATC
ACAACACCAGTTCGAGCTTGGCAAGAGCGACAGCCGTTTATGTATGTCGGGTTCGATCATGCTACGGGTAGCCTAAAGTT
GGCGGACTATTTTAAAACTCACTCTAGAGATGAGAGTGAATATTCGGTCCTCTATCGTTCAGAAGGCTACATCAGTGATG
CTCGTGGTGATACTTTTATACACGAAATCAGCGAAGAGACAGACTTCAAACTCAAATCCTCCTTTTATACCAAATCTGAT
ATGGAGAGCGGCTATAAAGCGGCCAAGATCAGCATTGAGCGCAATCAGGATCTCGATTTTATCTATGCATGTGCTACCGA
TGTCGCATTAGGTGCCGCTAAAGCCATTCGTGAATCTGGTTTGGATATTAAACTCAATGGCTGGGGCGGCGGTTCTGCAG
AATTGGAAGCGTTGGCTCGTGGTGATCTAGATGTTACTGTGATGCGAATGAATGACGACACTGGTATCGCGATGGCAGAA
GCGATTAAGTGGGATTTAGAGGGTTTTGCTGTACCTACCGTCTACTCTGGAGACTTTGAGGTTGTGACCAAAGAAGATAG
CCAAGAACATATAGAGTCGCTTAAACAGCGTGCTTTTAGATACTCAGGAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.043

100

0.637

Multiple sequence alignment