Detailed information NTG0092243

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: vsple_RS13005
• Genome accession: NZ_AP025503
• Coordinates: 2922922..2923926 (+)
• Length: 334 a.a.
• NCBI ID: WP_261882196.1
• Uniprot ID: -
• Organism: Vibrio pelagius strain ATCC 25916
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2917922..2928926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vsple_RS12985	metJ	2917950..2918270 (+)	321	WP_004415993.1	met regulon transcriptional regulator MetJ	-
vsple_RS12990	-	2918451..2919737 (-)	1287	WP_261882194.1	malic enzyme-like NAD(P)-binding protein	-
vsple_RS12995	rpmE	2919945..2920163 (-)	219	WP_255229734.1	50S ribosomal protein L31	-
vsple_RS13000	priA	2920486..2922687 (+)	2202	WP_261882195.1	primosomal protein N'	-
vsple_RS13005	cytR	2922922..2923926 (+)	1005	WP_261882196.1	DNA-binding transcriptional regulator CytR	Regulator
vsple_RS13010	-	2924048..2924581 (+)	534	WP_261883171.1	SPOR domain-containing protein	-
vsple_RS13015	hslV	2924757..2925305 (+)	549	WP_032549976.1	ATP-dependent protease subunit HslV	-
vsple_RS13020	hslU	2925357..2926691 (+)	1335	WP_261882197.1	HslU--HslV peptidase ATPase subunit	-
vsple_RS13025	-	2926851..2927768 (+)	918	WP_261882198.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
vsple_RS13030	rraA	2927842..2928360 (+)	519	WP_255229729.1	ribonuclease E activity regulator RraA	-
vsple_RS13035	zapB	2928431..2928673 (-)	243	WP_255229728.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36572.07 Da
• Isoelectric Point: 6.3471

>NTDB_id=92243 vsple_RS13005 WP_261882196.1 2922922..2923926(+) (cytR) [Vibrio pelagius strain ATCC 25916]
MATMKDVAQLAGVSTATVSRALMNPEKVSVTTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKAEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTSATLCQFRQQGYQQALRRAGVTMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPHDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDMLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=92243 vsple_RS13005 WP_261882196.1 2922922..2923926(+) (cytR) [Vibrio pelagius strain ATCC 25916]
ATGGCGACAATGAAGGATGTTGCCCAGTTGGCAGGTGTATCAACAGCGACAGTATCGCGAGCGCTGATGAACCCTGAAAA
AGTATCGGTGACGACTCGAAAGCGAGTTGAAACAGCGGTACTCGAAGCTGGATACTCACCCAACACTTTAGCTAGAAACT
TACGTCGCAACGAATCTAAAACCATCATCACCATCGTTCCTGATATCTGTGATCCCTACTTCGCTGAAATCATTCGCGGT
ATTGAAGACGCTGCCGTTGAAAACGACTACTTGGTGCTTCTAGGTGATAGCGGACAACAGAAAAAGCGTGAGAGCTCGTT
CGTAAACTTGGTCTTCACCAAGCAAGCAGACGGTATGCTGCTACTGGGAACCGACCACCCATTTGACGTCAGCAAAGCCG
AGCAGAAAAACCTGCCACCAATGGTTATGGCGTGTGAATTCGCTCCAGAGCTTGAGCTACCAACGGTACATATCGATAAC
CTGACCTCGGCATTTGAAGCGGTGAACTACCTAGCTCAGCTGGGTCATAAGCGTATCGCTCAGATCTCAGGCCCGACATC
AGCAACTCTCTGCCAATTCCGCCAACAAGGCTATCAACAAGCACTGCGCCGCGCAGGGGTTACCATGAACCCAGCCTACA
GCACGGTCGGTGACTTTACCTTTGAAGCGGGTGCACAAGCCGTTCGCCAACTGCTTGCACTGCCAGAGCAACCAACCGCT
ATTTTCTGTCACAATGACGCAATGGCAATTGGTGCGATTCAAGAGGCGAAGAAACTAGGTCTGCGCGTTCCACACGATCT
ATCGATTGTCGGCTTCGATGATATTCAGTTTGCCCAATACTGCGATCCACCGTTGACAACGATTTCCCAACCCCGTTACG
AGATTGGACGTCAGGCGATGTTGATGATGCTTGATATGCTCAAAGGCAATGATGTTCAAGCTGGCTCTCGTCTGCTTGAA
GCGAAACTGGTCGTTCGTGGGAGTACGGCACCACCGCGCATGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.157	99.401	0.886
cytR	Vibrio parahaemolyticus RIMD 2210633	86.486	99.701	0.862