Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   vsple_RS11575 Genome accession   NZ_AP025503
Coordinates   2661695..2662213 (-) Length   172 a.a.
NCBI ID   WP_255229923.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2656695..2667213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS11555 rpsP 2657228..2657476 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  vsple_RS11560 ffh 2657739..2659130 (-) 1392 WP_255229926.1 signal recognition particle protein -
  vsple_RS11565 - 2659331..2660125 (+) 795 WP_255229925.1 cytochrome C assembly family protein -
  vsple_RS11570 - 2660252..2661541 (+) 1290 WP_255229924.1 HlyC/CorC family transporter -
  vsple_RS11575 luxS 2661695..2662213 (-) 519 WP_255229923.1 S-ribosylhomocysteine lyase Regulator
  vsple_RS11580 - 2662237..2662878 (-) 642 WP_420833780.1 hypothetical protein -
  vsple_RS11585 gshA 2662889..2664457 (-) 1569 WP_261882076.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18973.81 Da        Isoelectric Point: 4.7447

>NTDB_id=92232 vsple_RS11575 WP_255229923.1 2661695..2662213(-) (luxS) [Vibrio pelagius strain ATCC 25916]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGEQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMADVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKAIIEAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92232 vsple_RS11575 WP_255229923.1 2661695..2662213(-) (luxS) [Vibrio pelagius strain ATCC 25916]
ATGCCTTTATTAGATAGTTTTACTGTAGATCACACACGCATGAATGCACCTGCGGTACGTGTGGCAAAAACCATGCAGAC
TCCTAAGGGAGATACGATCACAGTATTCGATTTACGTTTTACTGCACCGAATAAAGATATCCTGTCAGAGAAAGGAATTC
ACACTCTTGAGCACCTTTACGCTGGCTTTATGCGTGCACACTTAAATGGCGAGCAAGTTGAAATCATCGATATCTCACCA
ATGGGTTGTCGTACGGGTTTCTACATGAGCCTGATCGGTACACCTTCAGAGCAGCAAGTGGCTGACGCTTGGTTGGCAGC
AATGGCTGACGTGCTGAAAGTTGAGAGTCAAAACAAGATTCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTAGAAGAAGCAAAAGAGATTGCTAAGGCGATTATTGAGGCAGGTATCTCAGTGAATAAGAATGATGAACTGGCG
CTGCCAGAATCTATGCTTAAAGAATTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.643

99.419

0.901

Multiple sequence alignment