Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VRB99_RS14885 Genome accession   NZ_CP142163
Coordinates   3367221..3367856 (-) Length   211 a.a.
NCBI ID   WP_015372391.1    Uniprot ID   A0A0R2ZS79
Organism   Pseudomonas trivialis strain P_trivialis_B08_3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3358748..3378845 3367221..3367856 within 0


Gene organization within MGE regions


Location: 3358748..3378845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB99_RS14815 (VRB99_14815) - 3358748..3359710 (+) 963 WP_338487324.1 LysR family transcriptional regulator -
  VRB99_RS14820 (VRB99_14820) - 3359895..3360080 (-) 186 WP_003232175.1 hypothetical protein -
  VRB99_RS14825 (VRB99_14825) - 3360176..3360463 (-) 288 WP_338509490.1 XRE family transcriptional regulator -
  VRB99_RS14830 (VRB99_14830) - 3360697..3360831 (+) 135 WP_338477673.1 hypothetical protein -
  VRB99_RS14835 (VRB99_14835) - 3360926..3361384 (-) 459 WP_003232172.1 Hsp20 family protein -
  VRB99_RS14840 (VRB99_14840) - 3361730..3362200 (+) 471 WP_338487328.1 hypothetical protein -
  VRB99_RS14850 (VRB99_14850) - 3362599..3363270 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  VRB99_RS14855 (VRB99_14855) murB 3363335..3364354 (-) 1020 WP_338487331.1 UDP-N-acetylmuramate dehydrogenase -
  VRB99_RS14860 (VRB99_14860) - 3364351..3364815 (-) 465 WP_338487333.1 low molecular weight protein-tyrosine-phosphatase -
  VRB99_RS14865 (VRB99_14865) kdsB 3364815..3365579 (-) 765 WP_338477727.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB99_RS14870 (VRB99_14870) - 3365576..3365761 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB99_RS14875 (VRB99_14875) lpxK 3365786..3366796 (-) 1011 WP_338487335.1 tetraacyldisaccharide 4'-kinase -
  VRB99_RS14880 (VRB99_14880) - 3366796..3367224 (-) 429 WP_209982774.1 biopolymer transporter ExbD -
  VRB99_RS14885 (VRB99_14885) exbB 3367221..3367856 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB99_RS14890 (VRB99_14890) comA 3367951..3370176 (-) 2226 WP_338487337.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB99_RS14895 (VRB99_14895) - 3370312..3370827 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -
  VRB99_RS14900 (VRB99_14900) - 3370963..3373716 (+) 2754 WP_338487339.1 response regulator -
  VRB99_RS14905 (VRB99_14905) - 3373798..3374238 (+) 441 WP_338477731.1 hypothetical protein -
  VRB99_RS14910 (VRB99_14910) - 3374235..3374636 (+) 402 WP_057007490.1 META domain-containing protein -
  VRB99_RS14915 (VRB99_14915) - 3374763..3375338 (-) 576 WP_338487341.1 transposase -
  VRB99_RS14920 (VRB99_14920) - 3375335..3375967 (-) 633 WP_338487343.1 helix-turn-helix domain-containing protein -
  VRB99_RS14925 (VRB99_14925) - 3376085..3376546 (-) 462 WP_338477732.1 TlpA disulfide reductase family protein -
  VRB99_RS14930 (VRB99_14930) arsC 3376662..3377015 (+) 354 WP_338487345.1 arsenate reductase (glutaredoxin) -
  VRB99_RS14935 (VRB99_14935) wrbA 3377012..3377617 (+) 606 WP_338487348.1 NAD(P)H:quinone oxidoreductase -
  VRB99_RS14940 (VRB99_14940) - 3377710..3378845 (-) 1136 Protein_2945 IS3 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22998.16 Da        Isoelectric Point: 6.8768

>NTDB_id=922311 VRB99_RS14885 WP_015372391.1 3367221..3367856(-) (exbB) [Pseudomonas trivialis strain P_trivialis_B08_3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=922311 VRB99_RS14885 WP_015372391.1 3367221..3367856(-) (exbB) [Pseudomonas trivialis strain P_trivialis_B08_3]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCAGCGCTGGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCCGAGCATCTACTGGGGCAGGTATGGGGCTGGATCAAGAACA
AGCAGCTCGACAAACAGAAGCTCAAGGAACTGCGCGCCAATTCACCCCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCTGCCCGCGTCATTCATGAGCTGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACCGCA
GCGGGCCTGATGGTGGGTATTCCATCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGATCTGGTTGAGGACAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2ZS79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853