Detailed information NTG0092223

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: vsple_RS07750
• Genome accession: NZ_AP025503
• Coordinates: 1805761..1807185 (+)
• Length: 474 a.a.
• NCBI ID: WP_261881648.1
• Uniprot ID: -
• Organism: Vibrio pelagius strain ATCC 25916
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1800761..1812185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vsple_RS07730	-	1801691..1802212 (-)	522	WP_261881644.1	DUF2058 domain-containing protein	-
vsple_RS07735	-	1802364..1803422 (-)	1059	WP_261881645.1	AraC family transcriptional regulator	-
vsple_RS07740	-	1803610..1804647 (+)	1038	WP_261881646.1	DUF2804 domain-containing protein	-
vsple_RS07745	-	1804713..1805561 (+)	849	WP_261881647.1	sterol desaturase family protein	-
vsple_RS07750	sbcB	1805761..1807185 (+)	1425	WP_261881648.1	exodeoxyribonuclease I	Machinery gene
vsple_RS07755	-	1807266..1807637 (+)	372	WP_255230613.1	CidA/LrgA family protein	-
vsple_RS07760	-	1807639..1808316 (+)	678	WP_255230612.1	LrgB family protein	-
vsple_RS07765	cdd	1808633..1809520 (+)	888	WP_255230611.1	cytidine deaminase	-
vsple_RS07770	purT	1809690..1810865 (+)	1176	WP_261881649.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
vsple_RS07775	-	1811242..1811895 (-)	654	WP_261881650.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54624.83 Da
• Isoelectric Point: 4.7378

>NTDB_id=92223 vsple_RS07750 WP_261881648.1 1805761..1807185(+) (sbcB) [Vibrio pelagius strain ATCC 25916]
MSSDNQPTYFFFDYETWGTSPAKDRPSQFAGVRTDQDFNIIGDPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKIKAAQPKMFDYLYNMRHKRKLNELIDIVNMTPLMHVSGMLGKECNY
TSWIVPMAWHPTNQNAVIVVDLAKDPAPLLELDADELRERLYTKHSELGPDERPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLANLAILREHPEIREKLIGLYSVEREYEKDDDVDTQLYDGFFSPSDKAAMDIIRQTEPNNLAALDISFADE
RIEPLLFRYKARHYPWTLDESEQQKWANHCREFYESRLEEYMLNLENLAHEHENDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92223 vsple_RS07750 WP_261881648.1 1805761..1807185(+) (sbcB) [Vibrio pelagius strain ATCC 25916]
ATGAGCTCAGATAATCAGCCAACCTACTTCTTCTTCGATTACGAAACTTGGGGAACGAGCCCAGCCAAAGATCGACCAAG
TCAATTTGCGGGTGTTCGCACCGACCAAGATTTCAACATCATTGGAGATCCACTGGTTATCTATTGCCAACCACCCGCTG
ATTATCTACCAGCACCTGAAGCTGCATTGATTACGCGAATCACCCCACAGAAAGCAATGTCACAAGGCCTACCAGAGCCT
GAGTTCATCGCTAAAATTCATGCAGAGTTATCTAAGCCAAACACAACTAGTCTTGGGTATAACAGTATTCGATTCGACGA
TGAAGTGACTCGTTATACCTGTTACCGCAACTTTATCGATCCATATGCATGGAGCTGGCAAAACGGTAACTCTCGTTGGG
ATCTATTAGATGTGATGCGCGCCGTGCACGCGTTGCGTCCCGACGGCATCGTTTGGCCGGAGAATGAAGAAGGGTTCCCA
AGCTTTAAACTAGAGCACTTGTCTGTTGCTAACGGTATTGAACACGAAAATGCGCATGACGCGATGGCTGACGTTATCGC
AACCATTGAGCTGGCAAAGAAAATTAAAGCCGCTCAACCGAAAATGTTCGACTACCTATACAACATGCGCCACAAGCGTA
AACTGAATGAGCTGATCGACATTGTAAACATGACACCACTGATGCACGTGTCTGGCATGTTGGGGAAAGAGTGCAACTAC
ACCAGTTGGATTGTTCCAATGGCTTGGCACCCGACCAATCAAAACGCGGTTATCGTTGTTGATCTAGCGAAAGACCCAGC
ACCACTGCTTGAATTAGACGCAGATGAATTGCGTGAACGACTCTACACCAAACACAGCGAATTGGGCCCAGATGAGCGAC
CTGTACCGATTAAACTCGTGCAACTGAATAAGTGCCCTATTCTTGCTCCTGCGAAAACACTAACAGCCGAAAATGCTGAA
ACCATTGGCATTGATCGTCAGCAATGTCTCGCAAACTTAGCGATTCTTCGTGAACACCCAGAGATTCGCGAAAAACTGAT
TGGTCTTTACTCTGTTGAGCGCGAATACGAGAAAGACGACGATGTTGATACTCAGCTTTACGATGGTTTCTTCTCTCCGT
CAGATAAAGCCGCAATGGATATTATTCGCCAAACCGAACCAAACAACCTTGCAGCACTCGACATCAGCTTTGCCGACGAA
CGTATAGAACCCCTTCTGTTCCGTTACAAAGCGCGTCACTACCCTTGGACGTTAGATGAATCAGAACAGCAAAAATGGGC
TAATCACTGTCGTGAGTTTTACGAAAGTCGACTTGAAGAGTACATGCTCAACCTTGAGAATCTTGCTCATGAGCATGAAA
ACGACGAAAAGAAGATGGCGATACTCAAAGCGGTATATCAATACGTTGAGAAATTAGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	77.848	100	0.778