Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | vsple_RS04410 | Genome accession | NZ_AP025503 |
| Coordinates | 978456..978752 (+) | Length | 98 a.a. |
| NCBI ID | WP_255231126.1 | Uniprot ID | - |
| Organism | Vibrio pelagius strain ATCC 25916 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 973456..983752
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vsple_RS04400 | - | 975755..976027 (+) | 273 | WP_004736083.1 | HU family DNA-binding protein | - |
| vsple_RS04405 | ppiD | 976244..978109 (+) | 1866 | WP_261882766.1 | peptidylprolyl isomerase | - |
| vsple_RS04410 | comEA | 978456..978752 (+) | 297 | WP_255231126.1 | ComEA family DNA-binding protein | Machinery gene |
| vsple_RS04415 | rrtA | 978862..979395 (-) | 534 | WP_261882767.1 | rhombosortase | - |
| vsple_RS04420 | - | 979405..980022 (+) | 618 | WP_261882768.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| vsple_RS04425 | - | 980048..981391 (-) | 1344 | WP_261882769.1 | anti-phage deoxyguanosine triphosphatase | - |
| vsple_RS04430 | rimK | 981731..982636 (+) | 906 | WP_255231121.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| vsple_RS04435 | - | 982636..983658 (+) | 1023 | WP_261882770.1 | succinylglutamate desuccinylase/aspartoacylase family protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10775.35 Da Isoelectric Point: 4.8228
>NTDB_id=92218 vsple_RS04410 WP_255231126.1 978456..978752(+) (comEA) [Vibrio pelagius strain ATCC 25916]
MKSLYTLLMSFMIAFSASVWADSPSKAELYEGIEVTVNINTATAEELSALLVGIGDKKAEEIVQYRDQHGAFQKPDDLAN
VKGIGVATVEKNRKRIEL
MKSLYTLLMSFMIAFSASVWADSPSKAELYEGIEVTVNINTATAEELSALLVGIGDKKAEEIVQYRDQHGAFQKPDDLAN
VKGIGVATVEKNRKRIEL
Nucleotide
Download Length: 297 bp
>NTDB_id=92218 vsple_RS04410 WP_255231126.1 978456..978752(+) (comEA) [Vibrio pelagius strain ATCC 25916]
ATGAAAAGTTTATACACTCTTTTAATGTCTTTTATGATTGCTTTTAGTGCTTCAGTTTGGGCCGATAGTCCGTCTAAAGC
AGAACTTTATGAAGGTATTGAGGTAACGGTAAATATCAACACGGCCACAGCGGAAGAGTTGTCAGCTTTGTTAGTTGGTA
TCGGTGATAAAAAAGCTGAAGAAATCGTGCAGTATCGCGACCAACATGGCGCGTTTCAAAAGCCTGACGACTTAGCGAAT
GTCAAAGGCATCGGTGTTGCCACTGTTGAGAAGAACCGTAAGAGAATTGAACTCTAA
ATGAAAAGTTTATACACTCTTTTAATGTCTTTTATGATTGCTTTTAGTGCTTCAGTTTGGGCCGATAGTCCGTCTAAAGC
AGAACTTTATGAAGGTATTGAGGTAACGGTAAATATCAACACGGCCACAGCGGAAGAGTTGTCAGCTTTGTTAGTTGGTA
TCGGTGATAAAAAAGCTGAAGAAATCGTGCAGTATCGCGACCAACATGGCGCGTTTCAAAAGCCTGACGACTTAGCGAAT
GTCAAAGGCATCGGTGTTGCCACTGTTGAGAAGAACCGTAAGAGAATTGAACTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
53.061 |
100 |
0.531 |
| comEA | Vibrio cholerae C6706 |
51.02 |
100 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
51.02 |
100 |
0.51 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
53.191 |
95.918 |
0.51 |
| comEA | Acinetobacter baylyi ADP1 |
52.632 |
77.551 |
0.408 |
| comE | Neisseria gonorrhoeae MS11 |
42.391 |
93.878 |
0.398 |
| comE | Neisseria gonorrhoeae MS11 |
42.391 |
93.878 |
0.398 |
| comE | Neisseria gonorrhoeae MS11 |
42.391 |
93.878 |
0.398 |
| comE | Neisseria gonorrhoeae MS11 |
42.391 |
93.878 |
0.398 |
| comEA | Legionella pneumophila str. Paris |
38.776 |
100 |
0.388 |
| comEA | Legionella pneumophila strain ERS1305867 |
38.776 |
100 |
0.388 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
61.667 |
61.224 |
0.378 |