Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VRB29_RS14425 Genome accession   NZ_CP142155
Coordinates   3320024..3320659 (-) Length   211 a.a.
NCBI ID   WP_015372391.1    Uniprot ID   A0A0R2ZS79
Organism   Pseudomonas trivialis strain P_trivialis_W02_6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315024..3325659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB29_RS14390 (VRB29_14390) - 3315402..3316073 (+) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -
  VRB29_RS14395 (VRB29_14395) murB 3316138..3317157 (-) 1020 WP_338477726.1 UDP-N-acetylmuramate dehydrogenase -
  VRB29_RS14400 (VRB29_14400) - 3317154..3317618 (-) 465 WP_209982771.1 low molecular weight protein-tyrosine-phosphatase -
  VRB29_RS14405 (VRB29_14405) kdsB 3317618..3318382 (-) 765 WP_338485329.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB29_RS14410 (VRB29_14410) - 3318379..3318564 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB29_RS14415 (VRB29_14415) lpxK 3318589..3319599 (-) 1011 WP_338477728.1 tetraacyldisaccharide 4'-kinase -
  VRB29_RS14420 (VRB29_14420) - 3319599..3320027 (-) 429 WP_209982774.1 biopolymer transporter ExbD -
  VRB29_RS14425 (VRB29_14425) exbB 3320024..3320659 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB29_RS14430 (VRB29_14430) comA 3320754..3322979 (-) 2226 WP_338484437.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB29_RS14435 (VRB29_14435) - 3323115..3323630 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22998.16 Da        Isoelectric Point: 6.8768

>NTDB_id=922144 VRB29_RS14425 WP_015372391.1 3320024..3320659(-) (exbB) [Pseudomonas trivialis strain P_trivialis_W02_6]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=922144 VRB29_RS14425 WP_015372391.1 3320024..3320659(-) (exbB) [Pseudomonas trivialis strain P_trivialis_W02_6]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCAGCGCTGGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCCGAGCATCTACTGGGGCAGGTATGGGGCTGGATCAAGAACA
AGCAGCTCGACAAACAGAAACTCAAGGAGCTGCGCGCCAATTCACCCCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTGCCCGCGTCATTCATGAGCTGGAGCGCTACAT
CAATGCGCTCGGTACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACCGCA
GCGGGCCTGATGGTAGGTATTCCATCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGAGGACAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2ZS79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853