Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV49_RS22230 Genome accession   NZ_AP025500
Coordinates   1274074..1275168 (-) Length   364 a.a.
NCBI ID   WP_017111763.1    Uniprot ID   A0A1R3EX45
Organism   Vibrio lentus strain LMG 21034     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269074..1280168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS22210 - 1269832..1270140 (+) 309 WP_192853017.1 DUF1289 domain-containing protein -
  OCV49_RS22215 - 1270267..1270617 (-) 351 WP_065105359.1 HopJ type III effector protein -
  OCV49_RS22220 - 1270816..1271475 (+) 660 WP_192853016.1 PilZ domain-containing protein -
  OCV49_RS22225 luxQ 1271492..1274074 (-) 2583 WP_192853015.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV49_RS22230 luxP 1274074..1275168 (-) 1095 WP_017111763.1 substrate-binding domain-containing protein Regulator
  OCV49_RS22235 - 1275477..1275791 (-) 315 WP_065105355.1 GIY-YIG nuclease family protein -
  OCV49_RS22240 - 1275792..1276448 (-) 657 WP_065112737.1 YceH family protein -
  OCV49_RS22245 - 1276512..1276712 (-) 201 WP_192853014.1 hypothetical protein -
  OCV49_RS22250 - 1276908..1277222 (+) 315 WP_017105326.1 DUF496 family protein -
  OCV49_RS22255 - 1277641..1278267 (+) 627 WP_102517800.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV49_RS22260 - 1278430..1278666 (+) 237 WP_017110768.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41210.45 Da        Isoelectric Point: 5.1549

>NTDB_id=92210 OCV49_RS22230 WP_017111763.1 1274074..1275168(-) (luxP) [Vibrio lentus strain LMG 21034]
MKRLLMLLGLAVFSAPALSHGTHVLNGYWEYQDYLSKFPEQKALTDKMIEAVQNHPVPLRKIQDEPITISVVYPGQQISD
YWVRNIEAFEKRLDKLRINYQINQVFTRVNADITQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTDTKLILQNI
TTPVRSWADRQPFMYVGFDHATGSLKLAEYFKSNSKSDSQYSVLYRSEGYISDARGDTFIHDVNTDTNFALKSSFYTKSD
KESGYQAAKISIAKDKDLDFIYACATDVALGAADAIRESGRDILLNGWGGGSAELEAIERGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLAVPTVYSGDFELVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92210 OCV49_RS22230 WP_017111763.1 1274074..1275168(-) (luxP) [Vibrio lentus strain LMG 21034]
ATGAAACGTTTACTGATGTTGTTGGGACTTGCCGTATTTTCTGCGCCCGCTCTCTCCCATGGTACCCATGTCCTCAATGG
TTATTGGGAATACCAAGATTACCTTTCTAAATTTCCAGAGCAAAAAGCACTGACCGATAAAATGATCGAGGCTGTGCAAA
ACCACCCCGTTCCCTTAAGAAAAATTCAAGACGAACCCATCACAATCTCAGTGGTGTATCCAGGACAACAGATCTCAGAC
TATTGGGTTCGCAATATCGAAGCTTTCGAAAAAAGGCTCGATAAGCTGAGAATTAACTATCAGATAAATCAGGTGTTTAC
GCGAGTTAACGCGGATATCACCCAGCAAAGTATTTCACTACAAGAAGCCATTGAAAACAAAACGGACTACTTAATTTTCA
CTCTTGACACCACTCGTCATCGTAAATTTATTGAACACGTTTTGACGTCAACGGATACTAAGCTGATTCTCCAAAATATT
ACTACCCCAGTTCGATCATGGGCTGATAGGCAGCCATTTATGTATGTGGGTTTCGACCATGCGACAGGCAGCTTGAAGCT
GGCCGAGTACTTTAAAAGTAACAGTAAATCAGACAGCCAATATTCGGTTTTGTATCGTTCAGAAGGCTATATCAGTGATG
CTCGTGGAGACACCTTTATCCATGACGTGAATACCGATACTAACTTTGCACTCAAGTCCTCTTTTTACACTAAATCGGAT
AAAGAAAGCGGTTATCAAGCGGCGAAAATCAGCATAGCGAAAGATAAAGACCTAGACTTTATTTATGCATGTGCAACTGA
TGTGGCATTGGGTGCCGCAGATGCCATTCGTGAATCAGGGCGAGATATTCTTCTTAATGGTTGGGGAGGCGGTTCTGCCG
AGCTTGAAGCCATCGAAAGAGGTGATTTAGACGTGACTGTGATGCGGATGAATGACGACACAGGTATTGCCATGGCAGAA
GCCATTAAATGGGATCTGACGGGTTTAGCAGTACCGACCGTGTATTCTGGCGATTTTGAATTAGTCACCAAAGAAGATTC
TCCCGAACGAATTTCTGAACTCAAACAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EX45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.295

100

0.626

Multiple sequence alignment