Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VRB36_RS14920 Genome accession   NZ_CP142150
Coordinates   3352253..3352888 (-) Length   211 a.a.
NCBI ID   WP_015372391.1    Uniprot ID   A0A0R2ZS79
Organism   Pseudomonas poae strain B12_4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3347253..3357888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB36_RS14885 (VRB36_14885) - 3347631..3348302 (+) 672 WP_003232168.1 Bax inhibitor-1/YccA family protein -
  VRB36_RS14890 (VRB36_14890) murB 3348367..3349386 (-) 1020 WP_236325157.1 UDP-N-acetylmuramate dehydrogenase -
  VRB36_RS14895 (VRB36_14895) - 3349383..3349847 (-) 465 WP_169895495.1 low molecular weight protein-tyrosine-phosphatase -
  VRB36_RS14900 (VRB36_14900) kdsB 3349847..3350611 (-) 765 WP_003232162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB36_RS14905 (VRB36_14905) - 3350608..3350793 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB36_RS14910 (VRB36_14910) lpxK 3350818..3351828 (-) 1011 WP_003232161.1 tetraacyldisaccharide 4'-kinase -
  VRB36_RS14915 (VRB36_14915) - 3351828..3352256 (-) 429 WP_003232159.1 biopolymer transporter ExbD -
  VRB36_RS14920 (VRB36_14920) exbB 3352253..3352888 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB36_RS14925 (VRB36_14925) comA 3352998..3355223 (-) 2226 WP_338505783.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB36_RS14930 (VRB36_14930) - 3355359..3355874 (+) 516 WP_003232152.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22998.16 Da        Isoelectric Point: 6.8768

>NTDB_id=922020 VRB36_RS14920 WP_015372391.1 3352253..3352888(-) (exbB) [Pseudomonas poae strain B12_4]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=922020 VRB36_RS14920 WP_015372391.1 3352253..3352888(-) (exbB) [Pseudomonas poae strain B12_4]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTCTGTGGACCCTGCGTGCCAGTCGGGTGACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAACAGAAGCTCAAGGAACTGCGCGCCAATTCGCCCTTGGGAGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGCGGTATCTCCAAAGCCTTGATCACCACCGCA
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGAGGACAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2ZS79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853