Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VSF34_RS08455 Genome accession   NZ_CP142146
Coordinates   1704213..1705907 (-) Length   564 a.a.
NCBI ID   WP_326718059.1    Uniprot ID   -
Organism   Vagococcus jeotgali strain B2T-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699213..1710907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSF34_RS08425 - 1699377..1701272 (-) 1896 WP_326716876.1 penicillin-binding protein 2 -
  VSF34_RS08430 - 1701272..1701658 (-) 387 WP_326716877.1 cell division protein FtsL -
  VSF34_RS08435 rsmH 1701660..1702625 (-) 966 WP_326716878.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  VSF34_RS08440 mraZ 1702646..1703077 (-) 432 WP_326716879.1 division/cell wall cluster transcriptional repressor MraZ -
  VSF34_RS08445 - 1703275..1703646 (-) 372 WP_326716880.1 DUF3397 domain-containing protein -
  VSF34_RS08450 - 1703913..1704032 (+) 120 WP_326716881.1 DUF4044 domain-containing protein -
  VSF34_RS08455 recN 1704213..1705907 (-) 1695 WP_326718059.1 DNA repair protein RecN Machinery gene
  VSF34_RS08460 - 1705921..1706367 (-) 447 WP_326716882.1 ArgR family transcriptional regulator -
  VSF34_RS08465 - 1706380..1707207 (-) 828 WP_326716883.1 TlyA family RNA methyltransferase -
  VSF34_RS08470 - 1707204..1708106 (-) 903 WP_326716884.1 farnesyl diphosphate synthase -
  VSF34_RS08475 - 1708109..1708303 (-) 195 WP_326718060.1 exodeoxyribonuclease VII small subunit -
  VSF34_RS08480 xseA 1708354..1709676 (-) 1323 WP_326716885.1 exodeoxyribonuclease VII large subunit -
  VSF34_RS08485 folD 1709676..1710539 (-) 864 WP_326716886.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64050.09 Da        Isoelectric Point: 5.0267

>NTDB_id=921988 VSF34_RS08455 WP_326718059.1 1704213..1705907(-) (recN) [Vagococcus jeotgali strain B2T-5]
MIQELTVQDFAIISNLNIPFKDGMTVLTGETGAGKSIIIDAMGLLVGGRGSSDYIRDGKERCRIEGSFYIKDTLHALQFL
KERGIDITDDMVVIQREIYRSGRNNCRVNGQLVTTKFLRELGRFLVDIHGQNEHQELMQPHNHLKLLDQYATSGLHKKLK
DYREKFHIYKSLNDQLINLAQNEKEQAQRIDMLMFQHNEIEAAQLIEGEEEQLIEERRKLMNFQKISESLSKAGRYLESE
EISAVSLVGSAMSDMEQIEEIDTVYQDTADLLRTAYYSLQEASGNIADSLESLEMDESRLLEVDNRLDLIRQLKRKYGES
VIDILNYFEDINKELSLTSVDNLSVDDLEQKLNKLKKELQVLANELTQMREVTAKSLEEAIMKQLSELYMAQTVFSVKFT
KAADFLETGQDKVEFYISTNVGESLKPLAKVASGGELSRMMLALKTIFSKTQSITSIVFDEVDTGVSGRVAQAIAEKIHQ
IGLNSQVLCITHLPQVAAVADTQYFIKKEVKTNRTETIVQDLTKEQRVNEIARMLSGSEVTELTKEHAKELLALAKRESK
KRLT

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=921988 VSF34_RS08455 WP_326718059.1 1704213..1705907(-) (recN) [Vagococcus jeotgali strain B2T-5]
ATGATTCAAGAGTTAACTGTACAAGATTTTGCGATTATTTCTAATTTGAATATTCCTTTTAAAGACGGAATGACAGTGTT
GACTGGTGAAACAGGAGCAGGGAAATCAATTATTATTGATGCTATGGGATTACTTGTTGGTGGTAGAGGCTCTTCTGATT
ATATTAGAGACGGGAAAGAAAGGTGCCGGATTGAAGGGTCCTTTTATATAAAGGATACCCTTCATGCTTTGCAATTTTTA
AAAGAGCGAGGTATTGATATAACAGATGATATGGTTGTTATCCAAAGAGAGATTTATCGATCTGGTCGTAATAACTGCCG
GGTTAATGGTCAACTTGTTACAACGAAATTTTTGAGAGAATTAGGTCGTTTTTTAGTGGATATTCATGGTCAAAATGAAC
ATCAAGAATTGATGCAACCACATAATCATTTGAAATTGTTAGATCAGTATGCAACATCTGGTCTGCATAAAAAACTAAAG
GATTATCGTGAAAAGTTTCATATCTATAAATCATTAAATGATCAACTCATTAATTTAGCTCAAAATGAAAAAGAACAAGC
CCAAAGGATTGATATGTTGATGTTTCAACATAATGAAATAGAGGCTGCTCAATTAATTGAGGGTGAAGAAGAGCAGTTAA
TTGAAGAGCGGCGCAAACTGATGAATTTCCAAAAAATTTCAGAATCCTTGTCTAAAGCCGGACGTTATTTAGAGTCTGAG
GAGATAAGTGCTGTGTCTTTAGTAGGTAGTGCTATGAGCGATATGGAACAAATCGAGGAGATAGACACTGTATACCAAGA
TACAGCTGACTTGTTGCGAACAGCCTACTATTCTTTGCAAGAAGCATCAGGCAATATAGCTGACTCTCTAGAGAGTTTAG
AAATGGATGAGTCGAGACTACTTGAAGTAGATAATCGTCTAGATCTCATCCGTCAACTAAAACGTAAGTATGGTGAGAGT
GTCATAGATATTCTGAATTATTTTGAGGATATTAACAAGGAGTTATCGTTAACATCAGTTGATAATTTAAGTGTAGACGA
CTTAGAGCAAAAGTTGAACAAATTAAAAAAAGAATTACAAGTATTAGCAAATGAGCTGACCCAGATGAGAGAAGTAACGG
CTAAAAGTTTGGAAGAGGCCATAATGAAGCAGTTATCAGAACTCTACATGGCTCAAACTGTCTTCTCAGTTAAGTTTACT
AAAGCTGCTGACTTTCTAGAAACAGGGCAAGACAAAGTGGAATTTTATATTTCAACTAATGTGGGTGAATCTTTAAAACC
ATTAGCTAAAGTTGCTTCTGGTGGTGAGTTGTCTAGGATGATGTTAGCTTTGAAAACTATTTTTTCTAAAACTCAATCAA
TTACAAGCATTGTGTTTGATGAGGTTGATACAGGAGTAAGCGGACGTGTTGCTCAAGCGATTGCTGAAAAAATTCACCAG
ATCGGTTTGAATTCTCAAGTGCTATGTATCACTCACTTACCACAAGTAGCAGCCGTTGCGGATACTCAGTATTTTATTAA
AAAAGAAGTGAAAACAAATCGAACAGAGACAATCGTGCAAGATCTAACAAAAGAGCAAAGAGTGAATGAGATTGCTAGAA
TGCTATCAGGTAGTGAAGTGACGGAACTTACAAAAGAACATGCAAAAGAGTTGCTTGCATTGGCTAAAAGGGAGTCAAAA
AAGAGGCTGACTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.482