Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VSF34_RS02225 Genome accession   NZ_CP142146
Coordinates   429981..431792 (+) Length   603 a.a.
NCBI ID   WP_326717478.1    Uniprot ID   -
Organism   Vagococcus jeotgali strain B2T-5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 424981..436792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSF34_RS02210 yjeM 425852..427363 (-) 1512 WP_326717475.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  VSF34_RS02215 queG 427551..428696 (-) 1146 WP_326717476.1 tRNA epoxyqueuosine(34) reductase QueG -
  VSF34_RS02220 - 428807..429955 (+) 1149 WP_326717477.1 competence protein CoiA family protein -
  VSF34_RS02225 pepF 429981..431792 (+) 1812 WP_326717478.1 oligoendopeptidase F Regulator
  VSF34_RS02230 - 431848..432459 (-) 612 WP_326717479.1 DsbA family protein -
  VSF34_RS02235 - 432549..433148 (-) 600 WP_326717480.1 CYTH domain-containing protein -
  VSF34_RS02240 - 433281..433964 (+) 684 WP_326717481.1 GTP pyrophosphokinase family protein -
  VSF34_RS02245 - 433954..434742 (+) 789 WP_326717482.1 NAD kinase -
  VSF34_RS02250 - 434770..435657 (+) 888 WP_326717483.1 RluA family pseudouridine synthase -
  VSF34_RS02255 - 435691..436593 (+) 903 WP_326717484.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68997.78 Da        Isoelectric Point: 4.7093

>NTDB_id=921975 VSF34_RS02225 WP_326717478.1 429981..431792(+) (pepF) [Vagococcus jeotgali strain B2T-5]
MSETKQLPNRSELNEATTWDLTLIFPSDEAFDEAFNQLSDELTHAASYQGTLNRGSKEFLEAIEYILSIYRQTEKLYVYS
HLKNDQDTGNTTYQALYARASALAAKSSEAISWFDPEVLTLSNDTIKAYFEEEKGLEIYKHFIHQITDNREHTLSEKEEA
LLAGASEILSASGETFSVLNNADLVFPVVTDDAGDKVQLSSGLYGQLLESTNREVRKEAFEALYSVYEQFRNTFASTLST
HVKKHNFNANIRNYSSAREAALSANHIPESVYDTLLDVVHENLPLLHRYVELRKKLLNVSDLHMYDMYTPILGDAPIRYT
YEEAKDKSLEGLTPLGEDYLSIVKEAYGNRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHDSLNHLYTLVHEMGHSVHS
HYTRSTQPFVYGDYSIFLAEIASTTNENLLTEHLLQTEKDPKVRAFVLNHYLDGVKGTVFRQSQFAEFEHFIHVEDAKGT
PLTSDYLSEYYADLNAKYYGEAVERDPEIAYEWSRIPHFYYNYYVYQYATGFSAATALADKIIKKEEGALERYINFLKAG
SSDYPIDVMKKAGVDMTKPDYIEETMTVFEDRLNELESLIAKF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=921975 VSF34_RS02225 WP_326717478.1 429981..431792(+) (pepF) [Vagococcus jeotgali strain B2T-5]
ATGAGTGAAACAAAACAATTACCAAATCGTTCAGAATTAAATGAGGCAACAACGTGGGATTTAACCTTGATTTTCCCATC
TGATGAGGCCTTTGATGAGGCTTTTAATCAACTAAGTGATGAGTTAACTCACGCAGCTAGTTATCAGGGAACATTAAATA
GAGGATCAAAAGAATTTTTAGAGGCGATAGAGTATATTTTATCTATTTACCGTCAAACTGAAAAATTATATGTGTACTCA
CATTTAAAAAATGATCAAGACACAGGAAATACAACATATCAAGCATTATATGCTAGAGCAAGTGCTTTAGCGGCAAAATC
TAGTGAAGCTATATCATGGTTTGATCCAGAAGTCTTAACTTTGTCAAATGACACTATTAAAGCCTATTTTGAAGAAGAAA
AAGGTTTAGAAATCTATAAACATTTTATCCATCAAATTACAGATAATAGGGAACATACTTTGTCTGAAAAAGAAGAGGCA
TTACTGGCTGGAGCTAGTGAAATTTTGTCAGCTTCTGGTGAGACATTCTCCGTTTTAAACAATGCAGATTTAGTTTTCCC
AGTTGTGACAGATGACGCGGGAGACAAAGTTCAATTATCATCAGGACTATACGGACAATTACTAGAAAGTACAAATCGTG
AAGTGAGAAAAGAAGCCTTTGAAGCTTTATATTCTGTTTATGAACAATTCAGAAATACCTTTGCAAGTACTTTGTCAACT
CATGTGAAAAAACATAACTTTAACGCAAATATTAGAAACTACTCATCAGCCCGTGAAGCAGCTTTAAGTGCTAATCATAT
TCCTGAATCAGTTTATGATACATTGTTAGATGTGGTTCATGAAAACCTACCACTATTACACCGTTATGTTGAGTTACGTA
AAAAGTTATTAAATGTAAGTGACTTACATATGTATGACATGTATACACCGATTTTAGGGGATGCGCCTATTCGTTATACG
TATGAAGAAGCAAAAGACAAATCACTAGAAGGGCTAACACCACTTGGTGAAGATTATTTATCTATTGTTAAAGAAGCTTA
TGGTAATAGATGGATTGATGTGGTAGAAAACAAAGGTAAGAGAAGTGGGGCATACTCATCAGGAAGCTATGATACAAAGC
CGTATATCTTACTAAACTGGCATGATAGCTTAAATCATTTATATACCTTAGTTCATGAAATGGGACATAGTGTGCATAGC
CACTACACTAGAAGCACACAACCTTTTGTTTATGGTGACTATTCTATTTTCTTAGCAGAAATTGCCTCAACAACGAATGA
AAACTTGTTAACAGAGCATCTACTTCAAACAGAAAAAGACCCTAAAGTGCGTGCCTTTGTATTAAATCACTATTTAGACG
GGGTAAAAGGAACTGTCTTTAGACAATCTCAATTTGCTGAATTTGAGCATTTTATTCATGTTGAAGATGCTAAAGGAACA
CCTTTAACAAGTGATTACCTAAGTGAATATTACGCTGATTTAAATGCGAAATATTACGGGGAAGCAGTGGAGCGTGACCC
AGAGATTGCTTATGAGTGGAGTCGTATTCCTCATTTCTACTATAACTATTACGTGTATCAATATGCTACTGGATTTTCAG
CAGCCACAGCTTTAGCTGATAAAATCATCAAAAAAGAAGAGGGAGCTCTAGAGCGCTACATTAATTTCTTAAAAGCCGGA
AGTAGTGATTATCCGATTGATGTGATGAAAAAAGCTGGTGTTGATATGACAAAACCTGATTACATTGAAGAAACGATGAC
AGTCTTTGAAGATAGGTTAAATGAATTAGAATCCTTGATTGCGAAATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.04

98.507

0.532