Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV49_RS09920 Genome accession   NZ_AP025499
Coordinates   2161858..2163039 (-) Length   393 a.a.
NCBI ID   WP_192853104.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2156858..2168039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS09910 - 2158551..2159414 (+) 864 WP_192853102.1 AraC family transcriptional regulator -
  OCV49_RS09915 - 2159657..2161705 (+) 2049 WP_192853103.1 hybrid sensor histidine kinase/response regulator -
  OCV49_RS09920 cqsA 2161858..2163039 (-) 1182 WP_192853104.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV49_RS09925 - 2163250..2163375 (+) 126 WP_261890858.1 hypothetical protein -
  OCV49_RS09930 - 2163350..2164738 (-) 1389 WP_192853105.1 PLP-dependent aminotransferase family protein -
  OCV49_RS09935 - 2164842..2165738 (+) 897 WP_192853106.1 EamA family transporter -
  OCV49_RS09940 - 2165879..2166274 (-) 396 WP_017109773.1 DUF1090 domain-containing protein -
  OCV49_RS09945 - 2166533..2167543 (-) 1011 WP_192853107.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43617.89 Da        Isoelectric Point: 6.9314

>NTDB_id=92197 OCV49_RS09920 WP_192853104.1 2161858..2163039(-) (cqsA) [Vibrio lentus strain LMG 21034]
MSDKTKKKPLPSFIEERLNFHIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEESKPAFETKLASYVGMESCLLSQSGWAANIGLLQTVCPPGTPVYIDFFAHMSLWEGIRAAGAIAHPFMHNNMS
HLRKQLERHGSGVIVVDSIYSTIGTIAPLRDIYEMAQAFDCAVIVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLAVIKGAEDKRKALFERAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92197 OCV49_RS09920 WP_192853104.1 2161858..2163039(-) (cqsA) [Vibrio lentus strain LMG 21034]
ATGAGTGATAAAACCAAAAAAAAGCCATTACCTTCCTTTATTGAAGAACGCTTGAACTTCCATATTCAAGACCTGATCAC
CCAGAACCAAAGCCAGAAACACTTGGTGTTGGGTAAACGTCCACCGCGCAACGCTGTTGTGATGCAGAGCAATGATTACC
TAGCCCTTTCACACAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCG
GCCATTTTCCTGCAAGATGAAGAGTCTAAACCTGCGTTTGAAACCAAACTCGCGAGCTATGTGGGAATGGAAAGTTGCTT
GCTTTCTCAATCTGGCTGGGCGGCCAATATTGGGTTACTTCAAACTGTCTGTCCGCCAGGTACGCCTGTGTATATCGACT
TTTTTGCACACATGTCGCTATGGGAAGGCATTCGAGCTGCCGGTGCAATCGCCCATCCATTTATGCATAACAATATGAGT
CACTTACGTAAGCAACTAGAACGTCATGGCTCTGGTGTGATTGTCGTCGATTCGATCTACAGCACTATAGGCACCATTGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGCGTTTGATTGCGCCGTCATCGTTGATGAATCGCATTCACTGGGCACTC
ATGGAGAGAATGGTGCTGGCTTAGTGCAAGCTCTTGGGCTCACTAATCAAGTCGACTTTATCACCGTCAGCTTGGCCAAA
ACCTTTGCTTATCGTGCAGGCGCAATCCTCGGGCCTAAACAGCTCTCAGATACCTTGCCGTTTGTCGCATACCCTGCGAT
TTTTAGCTCAACTGTGTTGCCGCAAGAAGTGATTCGTTTAGAGAAAACCTTGGCGGTGATTAAAGGTGCAGAAGATAAAC
GAAAAGCATTATTTGAACGCGCTAAATCGCTCACCACAGGCCTCAAGCGGATTGGCTTTAACATCCGTAGCGAATCTCAA
ATCGTTGCGTTGGAGTGCGGTAATGAGAGGAATACAGAGCGAGTACGCGATTTCCTTGAAGAACGTGATGTGTTCGGTGC
AGTGTTCTGCCGCCCCGCTACGGGCAAGAACAAAAACATCATCCGATTTTCAGTGAATGCCGACATGACACCGCGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.522

98.473

0.537

Multiple sequence alignment