Detailed information NTG0092196

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QQK73_RS22545
• Genome accession: NZ_AP027971
• Coordinates: 4619325..4620350 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain VE-V10-F
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4614325..4625350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQK73_RS22535 (VEV10F_43320)	rpmE	4616556..4616768 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QQK73_RS22540 (VEV10F_43330)	priA	4616971..4619169 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
QQK73_RS22545 (VEV10F_43340)	cytR	4619325..4620350 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QQK73_RS22550 (VEV10F_43350)	ftsN	4620442..4621401 (+)	960	WP_000068837.1	cell division protein FtsN	-
QQK73_RS22555 (VEV10F_43360)	hslV	4621494..4622024 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QQK73_RS22560 (VEV10F_43370)	hslU	4622034..4623365 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
QQK73_RS22565 (VEV10F_43380)	menA	4623432..4624358 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QQK73_RS22570 (VEV10F_43390)	rraA	4624451..4624936 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QQK73_RS22575 (VEV10F_43400)	zapB	4625021..4625266 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=92196 QQK73_RS22545 WP_000644904.1 4619325..4620350(+) (cytR) [Escherichia coli strain VE-V10-F]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=92196 QQK73_RS22545 WP_000644904.1 4619325..4620350(+) (cytR) [Escherichia coli strain VE-V10-F]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628