Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VP456_RS12260 Genome accession   NZ_CP142142
Coordinates   2418999..2419607 (+) Length   202 a.a.
NCBI ID   WP_029973656.1    Uniprot ID   A0AAP3YAZ1
Organism   Bacillus velezensis strain PD9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413999..2424607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS12220 (VP456_12185) - 2415019..2415525 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  VP456_RS12225 (VP456_12190) - 2415664..2416077 (+) 414 WP_029973660.1 Hsp20/alpha crystallin family protein -
  VP456_RS12230 (VP456_12195) - 2416107..2416574 (-) 468 WP_029973659.1 YppG family protein -
  VP456_RS12235 (VP456_12200) - 2416761..2416943 (+) 183 WP_003153532.1 YppF family protein -
  VP456_RS12240 (VP456_12205) - 2416982..2417350 (-) 369 WP_029973658.1 YppE family protein -
  VP456_RS12245 (VP456_12210) - 2417396..2417641 (-) 246 WP_014418233.1 DUF5446 family protein -
  VP456_RS12250 (VP456_12215) sspM 2417847..2417951 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  VP456_RS12255 (VP456_12220) - 2417995..2418957 (-) 963 WP_029973657.1 DUF2515 domain-containing protein -
  VP456_RS12260 (VP456_12225) recU 2418999..2419607 (+) 609 WP_029973656.1 Holliday junction resolvase RecU Machinery gene
  VP456_RS12265 (VP456_12230) - 2419646..2422429 (+) 2784 WP_104678921.1 PBP1A family penicillin-binding protein -
  VP456_RS12270 (VP456_12235) - 2422507..2422998 (-) 492 WP_022553044.1 YpoC family protein -
  VP456_RS12275 (VP456_12240) nth 2422995..2423654 (-) 660 WP_007612187.1 endonuclease III -
  VP456_RS12280 (VP456_12245) dnaD 2423673..2424371 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=921923 VP456_RS12260 WP_029973656.1 2418999..2419607(+) (recU) [Bacillus velezensis strain PD9]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=921923 VP456_RS12260 WP_029973656.1 2418999..2419607(+) (recU) [Bacillus velezensis strain PD9]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896