Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VP456_RS09485 Genome accession   NZ_CP142142
Coordinates   1898686..1899120 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain PD9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1893686..1904120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS09480 (VP456_09455) - 1897186..1898397 (-) 1212 WP_025649439.1 cytochrome P450 -
  VP456_RS09485 (VP456_09460) nucA/comI 1898686..1899120 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VP456_RS09490 (VP456_09465) - 1899180..1899935 (+) 756 WP_022553315.1 YoaK family protein -
  VP456_RS09495 (VP456_09470) - 1899969..1900331 (-) 363 WP_007410383.1 hypothetical protein -
  VP456_RS09500 (VP456_09475) - 1900524..1901852 (-) 1329 WP_104679025.1 S8 family peptidase -
  VP456_RS09505 (VP456_09480) - 1902031..1902263 (+) 233 Protein_1819 hypothetical protein -
  VP456_RS09510 (VP456_09485) - 1902519..1903226 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  VP456_RS09515 (VP456_09490) - 1903286..1903738 (+) 453 WP_014305039.1 OsmC family protein -
  VP456_RS09520 (VP456_09495) - 1903752..1904105 (-) 354 WP_029973435.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=921922 VP456_RS09485 WP_007611576.1 1898686..1899120(+) (nucA/comI) [Bacillus velezensis strain PD9]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=921922 VP456_RS09485 WP_007611576.1 1898686..1899120(+) (nucA/comI) [Bacillus velezensis strain PD9]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486