Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VP456_RS08045 Genome accession   NZ_CP142142
Coordinates   1503341..1503625 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain PD9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498341..1508625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS08025 (VP456_08000) - 1499599..1500495 (+) 897 WP_029973683.1 ketopantoate reductase family protein -
  VP456_RS08030 (VP456_08005) - 1500524..1501756 (-) 1233 WP_007409644.1 aminopeptidase -
  VP456_RS08035 (VP456_08010) - 1501857..1501991 (-) 135 WP_003154559.1 protein YkpC -
  VP456_RS08040 (VP456_08015) mreBH 1502063..1503070 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  VP456_RS08045 (VP456_08020) abrB 1503341..1503625 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VP456_RS08050 (VP456_08025) - 1503798..1505102 (+) 1305 WP_014417634.1 ATP-binding protein -
  VP456_RS08055 (VP456_08030) - 1505104..1505931 (+) 828 WP_029973684.1 gamma-glutamylcyclotransferase -
  VP456_RS08060 (VP456_08035) ktrC 1505972..1506637 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  VP456_RS08065 (VP456_08040) ade 1506786..1508519 (+) 1734 WP_029973685.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=921917 VP456_RS08045 WP_024085249.1 1503341..1503625(+) (abrB) [Bacillus velezensis strain PD9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=921917 VP456_RS08045 WP_024085249.1 1503341..1503625(+) (abrB) [Bacillus velezensis strain PD9]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543