Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VP456_RS07835 Genome accession   NZ_CP142142
Coordinates   1466995..1467459 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain PD9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461995..1472459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS07815 (VP456_07790) - 1462476..1464296 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  VP456_RS07820 (VP456_07795) - 1464277..1465490 (-) 1214 Protein_1482 aminotransferase A -
  VP456_RS07825 (VP456_07800) - 1465691..1465852 (-) 162 WP_007409608.1 hypothetical protein -
  VP456_RS07830 (VP456_07805) cheV 1466041..1466952 (+) 912 WP_104678963.1 chemotaxis protein CheV -
  VP456_RS07835 (VP456_07810) kre 1466995..1467459 (-) 465 WP_014417605.1 YkyB family protein Regulator
  VP456_RS07840 (VP456_07815) - 1467582..1468874 (-) 1293 WP_029973674.1 MFS transporter -
  VP456_RS07845 (VP456_07820) - 1468950..1469444 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  VP456_RS07850 (VP456_07825) - 1469519..1470382 (-) 864 WP_021493757.1 metallophosphoesterase -
  VP456_RS07855 (VP456_07830) fadH 1470526..1471290 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  VP456_RS07860 (VP456_07835) - 1471404..1471952 (+) 549 WP_029973676.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=921915 VP456_RS07835 WP_014417605.1 1466995..1467459(-) (kre) [Bacillus velezensis strain PD9]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=921915 VP456_RS07835 WP_014417605.1 1466995..1467459(-) (kre) [Bacillus velezensis strain PD9]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTAACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929