Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VPX56_RS08270 Genome accession   NZ_CP142124
Coordinates   1746443..1747069 (+) Length   208 a.a.
NCBI ID   WP_131635523.1    Uniprot ID   A0A4R0G589
Organism   Enterobacter wuhouensis strain AV1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741443..1752069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPX56_RS08250 (VPX56_08250) - 1741842..1743602 (-) 1761 WP_326471034.1 Lon protease family protein -
  VPX56_RS08255 (VPX56_08255) matP 1743788..1744240 (+) 453 WP_131635525.1 macrodomain Ter protein MatP -
  VPX56_RS08260 (VPX56_08260) ompA 1744305..1745360 (-) 1056 WP_131635524.1 porin OmpA -
  VPX56_RS08265 (VPX56_08265) sulA 1745716..1746225 (-) 510 WP_326471989.1 SOS-induced cell division inhibitor SulA -
  VPX56_RS08270 (VPX56_08270) sxy/tfoX 1746443..1747069 (+) 627 WP_131635523.1 TfoX/Sxy family DNA transformation protein Regulator
  VPX56_RS08275 (VPX56_08275) yccS 1747026..1749188 (-) 2163 WP_326471039.1 YccS family putative transporter -
  VPX56_RS08280 (VPX56_08280) - 1749208..1749654 (-) 447 WP_326471041.1 YccF domain-containing protein -
  VPX56_RS08285 (VPX56_08285) helD 1749778..1751832 (+) 2055 WP_326471043.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24055.69 Da        Isoelectric Point: 8.6346

>NTDB_id=921867 VPX56_RS08270 WP_131635523.1 1746443..1747069(+) (sxy/tfoX) [Enterobacter wuhouensis strain AV1]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKHASSFLTLMKRGRPVLLN
YYRVDDGLWQDRQRLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQLEVLLCEAGITNEETLRQLGARESWLKMRAKN
KALSMKILFALEGAIEGLHEAALPALIRQELTEWLNALPDLQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=921867 VPX56_RS08270 WP_131635523.1 1746443..1747069(+) (sxy/tfoX) [Enterobacter wuhouensis strain AV1]
ATGAAAAAGATATCTTATGAACGGATTTATAAGTCGCAAGAATACCTGTCCCCGTTGGGTGAAATCCACCATCGTGCGCT
TTTCGGCGGCTATACCTTGGCCGTGGATGATGCGGTTTTCGCAATGGTGTCAGATGGCGAACTCTACCTGCGAGCCTGCG
AAGAAAGCGCAAAATACTGTGTAAAGCATGCTTCCTCTTTCCTGACCCTCATGAAGCGGGGGCGCCCGGTGCTGCTTAAT
TATTATCGCGTCGATGACGGCCTCTGGCAGGACAGACAAAGACTGCTTCAGCTTTCGTCATTTGCACTCGATGCGGCAAG
AAAAGAGCGCTATCAGCGGCATCAGCGCAATCGGCTCAAAGATCTGCCCAACCTGACGTTTCAACTGGAGGTTTTGCTCT
GTGAGGCCGGGATCACCAACGAAGAGACGTTGCGGCAGCTGGGTGCGAGAGAGAGCTGGCTGAAAATGCGGGCAAAAAAC
AAAGCGCTAAGTATGAAAATTCTCTTTGCGCTTGAGGGGGCAATAGAAGGGCTGCATGAGGCGGCGCTCCCGGCGCTGAT
TCGCCAGGAGCTAACCGAGTGGCTTAATGCGCTGCCCGATCTGCAGGAAAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0G589

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.099

97.596

0.587