Detailed information NTG0921860

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: VQ574_RS19300
• Genome accession: NZ_CP142122
• Coordinates: 4120817..4122082 (-)
• Length: 421 a.a.
• NCBI ID: WP_326429081.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain XN05-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4115817..4127082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VQ574_RS19285 (VQ574_19285)	rpoH	4118167..4119021 (-)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-
VQ574_RS19290 (VQ574_19290)	ftsX	4119133..4120152 (-)	1020	WP_326429080.1	permease-like cell division protein FtsX	-
VQ574_RS19295 (VQ574_19295)	ftsE	4120149..4120820 (-)	672	WP_045665759.1	cell division ATP-binding protein FtsE	-
VQ574_RS19300 (VQ574_19300)	pilA	4120817..4122082 (-)	1266	WP_326429081.1	signal recognition particle-docking protein FtsY	Machinery gene
VQ574_RS19305 (VQ574_19305)	-	4122311..4123663 (+)	1353	WP_326429083.1	pitrilysin family protein	-
VQ574_RS19310 (VQ574_19310)	-	4123656..4125188 (+)	1533	WP_326429084.1	pitrilysin family protein	-
VQ574_RS19315 (VQ574_19315)	rsmD	4125188..4125790 (+)	603	WP_326429085.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
VQ574_RS19320 (VQ574_19320)	-	4125802..4126206 (-)	405	WP_156244977.1	ribonucleotide reductase subunit alpha	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 44955.22 Da
• Isoelectric Point: 4.6598

>NTDB_id=921860 VQ574_RS19300 WP_326429081.1 4120817..4122082(-) (pilA) [Stutzerimonas frequens strain XN05-1]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPDSESVEQTGAPVESPVATPQEEQPARMVEADMQPAEEIE
PVLHPEPEPEPEPEPEPVSAPVVATAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTAD
VGVEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIEAGKRPYVILVVGVNGVGKTTTIGKLAKKLQ
LDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELK
KVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGID
DLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1266 bp

>NTDB_id=921860 VQ574_RS19300 WP_326429081.1 4120817..4122082(-) (pilA) [Stutzerimonas frequens strain XN05-1]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
GCCGCAGCCCGCGCCGGCAGAGCAGCCCGCCGCCGAACAGCCGGACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCGACACCTCAGGAAGAGCAACCGGCGCGCATGGTCGAGGCCGATATGCAGCCGGCTGAGGAGATAGAG
CCGGTGCTGCACCCTGAACCCGAACCCGAACCCGAACCCGAACCGGAGCCGGTATCTGCCCCGGTCGTAGCGACCGCGCC
GGAGGCCCCAACCAAGCTCGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCAGCGCCAGTATTGGCGAAGGTA
TGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAACTGGAAACCCGCCTGCTGACCGCCGAC
GTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCACCCGGCGCGTCTCGCGCAAGGAGCTGGCCGACAGCGGCGC
GCTCTACACCGCGCTGCAGGAAGAACTCGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGCGATCGAAGCTGGCAAGC
GCCCGTATGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGAAGCTGCAG
CTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACCTTCCGCGCTGCGGCGGTGGAGCAGCTGCAGGTGTGGGGCGA
ACGCAACGGCATTCCGGTGGTCGCCCAGCACACTGGTGCCGATTCCGCCTCGGTGATCTTCGATGCCGTGCAGGCGGCCA
AGGCGCGCGGCATCGACGTGCTGATCGCCGACACCGCGGGCCGACTGCATACCAAGGACAACCTGATGGAAGAGCTGAAG
AAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTGCTGGTACTCGACGCCGGCACTGGCCA
GAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCACTGACCAAGCTCGACGGCACCG
CCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATCGGCGTGGGTGAAGGCATCGAC
GATCTGCGCACCTTCGAGGCTGATGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGACGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (216-415)

• SRP54-type protein, helical bundle domain (SRP54_N) (131-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.061	100	0.496