Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV49_RS02515 Genome accession   NZ_AP025499
Coordinates   497664..498182 (+) Length   172 a.a.
NCBI ID   WP_017106874.1    Uniprot ID   A0A1B9QIF4
Organism   Vibrio lentus strain LMG 21034     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 492664..503182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS02505 gshA 495410..496978 (+) 1569 WP_029223242.1 glutamate--cysteine ligase -
  OCV49_RS02510 - 496989..497639 (+) 651 WP_032500972.1 hypothetical protein -
  OCV49_RS02515 luxS 497664..498182 (+) 519 WP_017106874.1 S-ribosylhomocysteine lyase Regulator
  OCV49_RS02520 - 498269..499540 (-) 1272 WP_017108711.1 CNNM domain-containing protein -
  OCV49_RS02525 - 499668..500462 (-) 795 WP_029223243.1 inner membrane protein YpjD -
  OCV49_RS02530 ffh 500663..502057 (+) 1395 WP_029223244.1 signal recognition particle protein -
  OCV49_RS02535 rpsP 502270..502518 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCV49_RS02540 rimM 502545..503099 (+) 555 WP_009847609.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.59 Da        Isoelectric Point: 4.4820

>NTDB_id=92182 OCV49_RS02515 WP_017106874.1 497664..498182(+) (luxS) [Vibrio lentus strain LMG 21034]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92182 OCV49_RS02515 WP_017106874.1 497664..498182(+) (luxS) [Vibrio lentus strain LMG 21034]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACGCGCATGAACGCCCCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACTTGCGTTTTACGGCACCAAATAAAGATATCCTATCTGAAAAAGGTATCC
ATACTCTAGAGCACCTATACGCGGGATTTATGCGTAATCAACTGAATGGTTCAGACGTGGAAATCATCGATATTTCACCG
ATGGGCTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAGCAAGTGGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAGCCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCTTTGGATGAAGCTAAAGATATCGCCAACGCGATCATCGCTGCAGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCAATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9QIF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment