Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VPZ82_RS27790 Genome accession   NZ_CP142110
Coordinates   5987210..5987611 (-) Length   133 a.a.
NCBI ID   WP_021783754.1    Uniprot ID   -
Organism   Pseudomonas putida strain WBC-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5982210..5992611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPZ82_RS27775 (VPZ82_27775) - 5984174..5986198 (-) 2025 WP_223271165.1 methyl-accepting chemotaxis protein -
  VPZ82_RS27780 (VPZ82_27780) - 5986246..5986800 (-) 555 WP_021783755.1 chemotaxis protein CheW -
  VPZ82_RS27785 (VPZ82_27785) pilH 5986797..5987162 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  VPZ82_RS27790 (VPZ82_27790) pilG 5987210..5987611 (-) 402 WP_021783754.1 response regulator Regulator
  VPZ82_RS27795 (VPZ82_27795) gshB 5987850..5988803 (+) 954 WP_021783753.1 glutathione synthase -
  VPZ82_RS27800 (VPZ82_27800) - 5988895..5989800 (+) 906 WP_021783752.1 energy transducer TonB -
  VPZ82_RS27805 (VPZ82_27805) - 5989976..5990971 (-) 996 WP_129934054.1 IS110 family transposase -
  VPZ82_RS27810 (VPZ82_27810) - 5991737..5992306 (+) 570 WP_021783751.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14630.91 Da        Isoelectric Point: 6.4772

>NTDB_id=921773 VPZ82_RS27790 WP_021783754.1 5987210..5987611(-) (pilG) [Pseudomonas putida strain WBC-3]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHVP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=921773 VPZ82_RS27790 WP_021783754.1 5987210..5987611(-) (pilG) [Pseudomonas putida strain WBC-3]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGCTGCTCGGTGAAGC
GGGTTGCGAGGTGATCACTGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGATACCCCG
GTTATCCTGCTGTCGTCGCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGTACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632