Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VP504_RS22080 Genome accession   NZ_CP142109
Coordinates   909025..910209 (+) Length   394 a.a.
NCBI ID   WP_325894209.1    Uniprot ID   -
Organism   Grimontia sp. NTOU-MAR1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 904025..915209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP504_RS22055 (VP504_22060) - 904507..905334 (-) 828 WP_325894200.1 AraC family transcriptional regulator -
  VP504_RS22060 (VP504_22065) - 905433..905777 (-) 345 WP_325894202.1 hypothetical protein -
  VP504_RS22065 (VP504_22070) - 905777..906001 (-) 225 WP_325894204.1 hypothetical protein -
  VP504_RS22070 (VP504_22075) - 906683..907312 (+) 630 WP_325894206.1 class II aldolase/adducin family protein -
  VP504_RS22075 (VP504_22080) - 907711..908715 (+) 1005 WP_325894208.1 alpha/beta hydrolase-fold protein -
  VP504_RS22080 (VP504_22085) cqsA 909025..910209 (+) 1185 WP_325894209.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VP504_RS22085 (VP504_22090) - 910257..912314 (-) 2058 WP_325894210.1 response regulator -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42944.75 Da        Isoelectric Point: 4.8932

>NTDB_id=921756 VP504_RS22080 WP_325894209.1 909025..910209(+) (cqsA) [Grimontia sp. NTOU-MAR1]
MNNQSTITKTLPSFIETRLNSFLRDMTEPYENSRPLPVSSRPGQGAVVMQSNDYLSLSLNDSIQSAHLNAIAASKENVVM
SAVFLQDEDHKPDFESRLAEFVGMDGCVLSQSGWAANIGLLQTICEPGTRVYIDFFAHMSLLEGARIAGAKIIPFLHNSV
SNLKRQIKKNGPGIILVDSVYSTIGTVAPLPSICDVAEEFGCALVVDESHSLGTHGPGGSGLINEMGVRDRVDFVTTSLA
KAFAYRAGAVLGPDKLITTMPFVSFPAIFSSTVLPQEVARLDVTLDVIKNADERRRRLFEVSDSLRHGLQNIGFNIRSDS
QIISLECGDEQNTEQVRDFLEANGVFGAVFCAPATPKNKAIIRFSLSADMSNQEVDQVLTVCQAAYDNPKLNFY

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=921756 VP504_RS22080 WP_325894209.1 909025..910209(+) (cqsA) [Grimontia sp. NTOU-MAR1]
ATGAATAATCAATCAACTATTACAAAAACACTCCCTTCTTTTATAGAAACACGTCTCAATTCGTTTTTGCGCGATATGAC
AGAGCCTTATGAAAATTCGCGGCCGCTACCAGTCAGTAGTCGGCCGGGACAAGGAGCTGTCGTGATGCAAAGTAACGATT
ACTTATCACTGAGCCTGAATGACTCTATTCAATCAGCGCATCTGAATGCGATTGCGGCATCTAAGGAAAACGTCGTGATG
TCAGCAGTATTTCTTCAGGATGAAGACCACAAACCCGATTTTGAAAGTAGGTTGGCTGAGTTTGTTGGCATGGATGGTTG
CGTGTTGTCGCAATCGGGCTGGGCGGCAAATATTGGTTTGCTGCAAACTATTTGCGAACCGGGAACACGGGTTTATATCG
ACTTCTTTGCGCACATGTCGCTTTTGGAGGGAGCTCGTATTGCGGGTGCGAAGATTATTCCTTTTCTACACAATAGCGTG
AGCAATCTTAAGCGCCAAATTAAAAAAAATGGCCCAGGTATAATCCTGGTCGACTCGGTATACAGCACTATCGGTACGGT
TGCTCCTCTTCCCTCTATTTGTGATGTGGCTGAGGAATTTGGCTGTGCGTTAGTGGTTGATGAATCTCATTCTTTGGGAA
CTCATGGCCCCGGTGGCTCAGGATTAATTAATGAGATGGGTGTGCGTGACAGGGTAGATTTTGTTACAACAAGCCTTGCG
AAAGCATTTGCCTACCGGGCAGGGGCTGTATTGGGACCGGATAAACTTATCACGACAATGCCTTTTGTATCTTTCCCTGC
TATTTTTAGTTCCACTGTGTTGCCGCAAGAAGTTGCGCGCTTAGATGTGACTTTAGACGTAATAAAAAATGCTGATGAAA
GGCGAAGGCGGCTGTTTGAAGTCTCTGACTCTCTCCGTCATGGTCTTCAAAACATTGGATTTAACATTCGCAGCGATTCT
CAAATCATTTCGCTGGAATGCGGGGATGAACAAAACACAGAGCAGGTCCGCGACTTCTTGGAAGCGAATGGAGTTTTTGG
GGCGGTATTCTGTGCGCCTGCTACACCCAAGAATAAAGCTATCATCCGGTTTTCTCTCAGTGCTGATATGAGTAACCAAG
AGGTCGATCAGGTACTGACAGTGTGTCAGGCGGCTTACGATAATCCGAAGTTGAACTTCTATTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(49-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

51.733

95.178

0.492