Detailed information NTG0921732

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VP504_RS08580
• Genome accession: NZ_CP142108
• Coordinates: 1884594..1887971 (+)
• Length: 1125 a.a.
• NCBI ID: WP_325893891.1
• Uniprot ID: -
• Organism: Grimontia sp. NTOU-MAR1
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1879594..1892971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP504_RS08560 (VP504_08555)	-	1880201..1880527 (-)	327	WP_325893884.1	hypothetical protein	-
VP504_RS08565 (VP504_08560)	hemL	1880606..1881895 (+)	1290	WP_325893885.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VP504_RS08570 (VP504_08565)	-	1882140..1883222 (+)	1083	WP_325893887.1	AI-2E family transporter	-
VP504_RS08575 (VP504_08570)	rsmC	1883328..1884347 (+)	1020	WP_325893889.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VP504_RS08580 (VP504_08575)	chiS	1884594..1887971 (+)	3378	WP_325893891.1	response regulator	Regulator
VP504_RS08585 (VP504_08580)	-	1888814..1890496 (+)	1683	WP_325893892.1	ABC transporter substrate-binding protein	-
VP504_RS08590 (VP504_08585)	-	1890616..1891602 (+)	987	WP_325893893.1	ABC transporter permease	-
VP504_RS08595 (VP504_08590)	-	1891605..1892630 (+)	1026	WP_325893894.1	ABC transporter permease	-

Sequence

Protein

• Length: 1125 a.a.
• Molecular weight: 126679.15 Da
• Isoelectric Point: 5.1816

>NTDB_id=921732 VP504_RS08580 WP_325893891.1 1884594..1887971(+) (chiS) [Grimontia sp. NTOU-MAR1]
MQNKQKFKRLQHTLMLAFLVLSITPLSLLAIFFLESHSSDLEQQSTTHLSFLRDNKKEQIISYFDARHSEVKSFSRSELA
TASGGRFYGLIAAFHQLGDTEEIARNVARERYGADANSTLPPGTNDSNFIGSERYRLLHKRYDWAYKEHLKRSDFSDILL
VDIKGNVVYSALKDDVFGSNLLDEKWRHTAIGKTFADIQKTVDAPLVDGDNTPIAFTDYTQQADGEMVAWFAAPIMQQGY
LHSYVLFKLPNTALDKMLNKTPQEKGYISTLLVGNDLIPRNLVTKDTLRPINSIAIEAALAGLRDVGSFLSSDNQRVLGA
YAPVNITGTTWAIVLELPEEEAFARIYQLEKIFIAVMVIAILLVVIASHMLSNSITAPLLKLTWAAEQVSAGDLDQKINN
TDREDEIGRLAVSFARMQRSVRDKLALIREQNKELEQNIQVIKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAES
ILAGAEGPLPERQKHQLQMIINSGERLSNLVDDLLDYHKMRYGELEISPQAVDTANAVRLVIELSSHLLGGKPVRIINQV
PIDLPLVRADEQRLEQVLYNLIGNAIKYTDEGKIIISANVLEGQLRIQVVDTGQGIPSDQLEYIFEPLTQASGNAAQYRQ
GAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEEDKAKTRLANNAHFAAPRVELDQTDYTQLPENPDGPLIM
VVDDEPVNLQVLNNFLRLEGYRVKAVENGRQAIESVTMEKPALMLLDVMMPELSGYEVCTHLRERHSRADLPIIMLSALG
QVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINASLTEQEREHNRTLQKEIHFREQVEAGLREVQNRLLGMLDSASEG
IICVQENGRISYANDACSEIFRLSAEQIERHQLEDFLAMVLPEPESSRGHYSGQFRFKVDGDIAEIDTDLITLPEASGLQ
MMLILNTGKKASSHRVQLLENAVSALSDYAYDGDMEKLQQLRELGGEFTRMADRFSGSKPDKADILRDTLVKVMTATLNF
WQNSTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETVPKSPRWRTVISTIDFVLERCLEENRERNELEVLRERLQ
TLISR

Nucleotide

• Length: 3378 bp

>NTDB_id=921732 VP504_RS08580 WP_325893891.1 1884594..1887971(+) (chiS) [Grimontia sp. NTOU-MAR1]
ATGCAAAACAAGCAGAAATTTAAACGACTTCAGCACACGCTGATGTTGGCTTTTCTGGTGCTGAGTATTACGCCTCTCAG
CCTGCTGGCGATTTTCTTCCTTGAATCTCACAGCAGCGATCTCGAACAACAAAGCACCACACACCTATCTTTCCTTCGTG
ATAACAAAAAAGAGCAAATAATCAGCTACTTTGATGCCCGTCACTCAGAGGTGAAATCCTTCAGTCGCTCTGAACTGGCA
ACCGCCAGTGGTGGACGCTTCTATGGATTAATTGCCGCCTTCCACCAATTGGGAGATACGGAAGAAATTGCCCGAAATGT
TGCACGTGAGCGCTATGGTGCTGATGCCAACTCAACGCTTCCTCCAGGTACAAATGACAGCAACTTCATTGGCAGCGAGC
GCTACCGCCTCCTGCACAAGCGCTACGACTGGGCTTACAAAGAGCATCTTAAACGTTCTGACTTTTCAGATATTTTGTTG
GTCGACATCAAGGGTAATGTCGTTTATTCCGCACTTAAGGATGACGTTTTTGGTTCTAACTTACTCGACGAGAAGTGGCG
TCATACTGCCATTGGCAAAACTTTTGCTGATATACAGAAAACAGTGGATGCACCGCTGGTCGATGGCGATAACACCCCGA
TAGCGTTTACCGACTACACCCAACAAGCCGACGGTGAAATGGTGGCGTGGTTTGCTGCGCCGATCATGCAACAAGGCTAT
TTACACAGTTATGTTTTGTTCAAACTGCCTAATACGGCATTGGACAAAATGCTTAACAAGACGCCACAGGAAAAGGGTTA
CATCAGTACGCTGCTAGTTGGAAATGACCTGATCCCCCGAAATTTGGTGACCAAAGACACTTTAAGGCCAATTAATAGCA
TCGCCATTGAGGCTGCACTTGCAGGGCTTCGCGATGTTGGCAGCTTCTTAAGCTCTGACAACCAACGTGTGTTAGGTGCC
TATGCGCCGGTCAACATCACCGGTACAACCTGGGCGATTGTTCTCGAGCTGCCGGAAGAAGAGGCTTTTGCCCGTATTTA
TCAGTTAGAGAAAATCTTCATTGCCGTGATGGTAATCGCCATCTTGTTGGTGGTCATTGCTTCGCACATGCTGTCTAACT
CCATCACAGCCCCGCTTCTAAAACTAACCTGGGCTGCAGAACAGGTCTCGGCGGGCGATCTGGATCAGAAGATAAACAAT
ACTGACCGCGAAGATGAAATCGGGCGGTTGGCAGTAAGTTTTGCGCGCATGCAGCGCTCAGTCCGAGACAAACTCGCACT
CATCCGAGAGCAAAACAAAGAGCTTGAACAGAACATTCAAGTCATCAAGCAAAAGAACGAAGAGCTGCAGCAAGCCGACC
GCATGAAAGATGATTTTCTTGCAACGACTTCCCACGAGCTCCGCACACCACTTCACGGTATGGTAGGGATTGCAGAGTCC
ATACTTGCCGGCGCGGAAGGCCCGCTTCCAGAACGTCAAAAGCATCAGCTTCAGATGATTATCAACAGTGGAGAACGCCT
TTCTAACCTCGTTGATGATTTGCTGGATTATCACAAGATGCGTTACGGCGAGCTTGAAATCTCTCCTCAAGCTGTAGATA
CCGCAAATGCAGTGAGGCTGGTTATTGAGCTTTCCAGTCACCTACTGGGCGGAAAGCCGGTGCGTATTATTAATCAGGTG
CCTATCGACTTGCCGTTGGTACGTGCCGACGAGCAGCGTCTAGAGCAGGTGTTGTACAACTTGATTGGTAACGCCATCAA
GTATACAGACGAGGGCAAGATCATCATTTCTGCCAACGTATTGGAAGGTCAGCTTCGCATTCAGGTGGTAGATACTGGTC
AGGGAATCCCCTCCGACCAACTCGAGTACATCTTCGAGCCACTGACCCAAGCCAGTGGTAACGCGGCTCAATACCGTCAG
GGGGCAGGACTTGGCTTATCTATCAGCCGCCAGCTTATCGACATCATGGGCGGTCAGCTGTATGTATCCAGCCAGCCTAT
GGTAGGAACGACGTTCAGCTTCACCTTGCCACTGGCAACCGAAGAAGATAAAGCAAAAACACGTCTTGCCAATAATGCGC
ATTTCGCCGCTCCCCGTGTAGAGCTGGATCAAACAGATTACACCCAGCTGCCGGAAAACCCAGATGGTCCTCTCATCATG
GTGGTGGACGACGAACCTGTAAACCTACAGGTTCTTAATAACTTTCTGCGTCTCGAAGGTTATCGGGTGAAAGCCGTTGA
AAATGGCCGCCAGGCTATTGAGTCTGTCACGATGGAAAAACCTGCGCTGATGTTGCTGGATGTCATGATGCCGGAGCTTA
GTGGCTATGAAGTATGTACTCACCTTCGAGAGCGACACAGTCGTGCCGATCTACCTATCATCATGCTTTCAGCGTTAGGT
CAGGTTCAGGATAAGGTGAAAGGATTTGATGCGGGAGCCAATGACTACCTGACCAAACCTTTCAATAAAGACGAACTCAG
TGCCCGTATCCGAGCTTATATTAATGCCTCGCTGACCGAGCAGGAGCGCGAGCACAATCGCACGTTACAAAAAGAAATTC
ACTTCCGCGAGCAAGTGGAAGCTGGCCTTCGTGAAGTGCAAAACAGGCTACTTGGCATGCTGGATAGCGCATCTGAAGGC
ATTATCTGTGTGCAGGAGAATGGCCGGATAAGTTATGCCAATGATGCTTGCAGTGAAATCTTCCGTCTCAGTGCCGAACA
AATCGAACGCCACCAACTCGAAGACTTCTTGGCAATGGTGCTGCCTGAACCAGAATCCTCACGAGGTCACTACAGCGGCC
AGTTCAGGTTTAAAGTCGACGGTGATATTGCCGAAATCGACACTGATTTAATCACACTGCCCGAGGCCTCTGGCTTACAA
ATGATGCTAATCCTCAATACCGGAAAGAAAGCTTCCTCACACCGCGTACAGCTCTTGGAAAATGCTGTCTCGGCACTGTC
CGACTATGCCTATGACGGTGATATGGAGAAGCTTCAGCAACTTCGTGAGCTTGGCGGGGAATTCACACGAATGGCAGACC
GCTTTTCAGGCAGCAAACCGGATAAAGCCGATATCCTCAGAGATACGCTGGTCAAAGTGATGACTGCCACTTTGAATTTT
TGGCAGAACTCCACCGGCAAAACCAAGTTTGACCTTGCAGAGGAAAGCGGGCTTTGGCGAGTCTACTTAGACAGAAGTAC
CTTGCAGACCCGTACGCTGGACAAATACCTCCATGTTGAAACTGTCCCTAAATCCCCTCGTTGGCGCACTGTTATCAGTA
CCATCGACTTTGTCCTGGAACGCTGTCTTGAAGAAAACAGAGAAAGGAATGAACTTGAAGTACTCAGGGAAAGGCTACAG
ACCTTAATTTCCCGATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (719-831)

• PAS fold (PAS) (872-917)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (570-679)

• HAMP domain (HAMP) (371-422)

• His Kinase A (phospho-acceptor) domain (HisKA) (455-521)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.61	100	0.567