Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV49_RS01045 Genome accession   NZ_AP025499
Coordinates   227472..228476 (-) Length   334 a.a.
NCBI ID   WP_192853344.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 222472..233476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS01015 zapB 222609..222851 (+) 243 WP_017104626.1 cell division protein ZapB -
  OCV49_RS01020 rraA 222961..223479 (-) 519 WP_102362930.1 ribonuclease E activity regulator RraA -
  OCV49_RS01025 - 223553..224470 (-) 918 WP_076668761.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV49_RS01030 hslU 224626..225966 (-) 1341 WP_017104629.1 HslU--HslV peptidase ATPase subunit -
  OCV49_RS01035 hslV 226025..226573 (-) 549 WP_017104630.1 ATP-dependent protease subunit HslV -
  OCV49_RS01040 - 226810..227349 (-) 540 WP_192853343.1 SPOR domain-containing protein -
  OCV49_RS01045 cytR 227472..228476 (-) 1005 WP_192853344.1 DNA-binding transcriptional regulator CytR Regulator
  OCV49_RS01050 priA 228717..230918 (-) 2202 WP_192853345.1 primosomal protein N' -
  OCV49_RS01055 rpmE 231250..231468 (+) 219 WP_017055855.1 50S ribosomal protein L31 -
  OCV49_RS01060 - 231804..233093 (+) 1290 WP_017104634.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36525.03 Da        Isoelectric Point: 6.4911

>NTDB_id=92169 OCV49_RS01045 WP_192853344.1 227472..228476(-) (cytR) [Vibrio lentus strain LMG 21034]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPSTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92169 OCV49_RS01045 WP_192853344.1 227472..228476(-) (cytR) [Vibrio lentus strain LMG 21034]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGTAAACGAGTAGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCTGAGATCATCCGTGGT
ATCGAAGATGCTGCAGTAGAAAATGACTACCTAGTTCTACTTGGCGACAGTGGTCAGCAGAAGAAGCGCGAATCATCATT
TGTAAACTTGGTATTCACCAAACAAGCTGACGGCATGCTGCTGTTAGGCACTGATCATCCATTTGATGTCAGCAAACCTG
AACAAAAGAATCTACCTCCAATGGTAATGGCGTGTGAATTTGCACCCGAGCTTGAATTGCCAACGGTACATATCGACAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCTCAATTAGGTCATAAGCGCATTGCTCAAATCTCTGGGCCAAGCAC
TGCAACCCTGTGTAAGTTCCGCCAACAAGGTTACCAACAAGCACTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCTGGCGCGCAAGCGGTTCGTCAATTATTGGCACTTCCAGAGCAACCAACTGCG
ATTTTCTGTCACAACGATGCGATGGCCATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGTGTTCCTCAAGATCT
ATCGATTGTTGGCTTCGACGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACGATTTCTCAACCTCGTTACG
AAATTGGACGCCAAGCGATGCTGATGATGCTTGATCTACTGAAAGGTAATGATGTTCAAGCAGGTTCACGTCTACTTGAA
GCCAAACTCGTGGTTCGTGGCAGTACGGCACCACCTCGAATTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877

Multiple sequence alignment