Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VRA41_RS05330 Genome accession   NZ_CP142105
Coordinates   1007777..1008589 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain SCB0351     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1002777..1013589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS05305 (VRA41_05305) - 1003713..1004099 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  VRA41_RS05310 (VRA41_05310) - 1004191..1005071 (-) 881 Protein_1003 GNAT family N-acetyltransferase -
  VRA41_RS05315 (VRA41_05315) yidA 1005279..1006088 (+) 810 WP_011226081.1 sugar-phosphatase -
  VRA41_RS05320 (VRA41_05320) - 1006090..1007304 (+) 1215 WP_011227270.1 aminoacyltransferase -
  VRA41_RS05325 (VRA41_05325) - 1007356..1007717 (-) 362 Protein_1006 YbaN family protein -
  VRA41_RS05330 (VRA41_05330) vicX 1007777..1008589 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  VRA41_RS05335 (VRA41_05335) vicK 1008595..1009935 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  VRA41_RS05340 (VRA41_05340) vicR 1009928..1010635 (-) 708 WP_011227274.1 response regulator YycF Regulator
  VRA41_RS05345 (VRA41_05345) - 1011167..1011934 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  VRA41_RS05350 (VRA41_05350) - 1011946..1012779 (+) 834 WP_011227276.1 transporter substrate-binding domain-containing protein -
  VRA41_RS05355 (VRA41_05355) - 1012797..1013495 (+) 699 WP_011226087.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=921675 VRA41_RS05330 WP_011681204.1 1007777..1008589(-) (vicX) [Streptococcus thermophilus strain SCB0351]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=921675 VRA41_RS05330 WP_011681204.1 1007777..1008589(-) (vicX) [Streptococcus thermophilus strain SCB0351]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774