Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VRA41_RS02165 Genome accession   NZ_CP142105
Coordinates   400811..401254 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 395811..406254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS02145 (VRA41_02145) - 396332..397084 (-) 753 WP_011226910.1 NUDIX domain-containing protein -
  VRA41_RS02150 (VRA41_02150) - 397148..398254 (-) 1107 WP_011226911.1 AAA family ATPase -
  VRA41_RS02155 (VRA41_02155) gdhA 398598..399950 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  VRA41_RS02160 (VRA41_02160) - 400209..400619 (+) 411 WP_011225559.1 peptide deformylase -
  VRA41_RS02165 (VRA41_02165) rcrR 400811..401254 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VRA41_RS02170 (VRA41_02170) rcrP 401258..403072 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  VRA41_RS02175 (VRA41_02175) rcrQ 403062..404840 (+) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  VRA41_RS02180 (VRA41_02180) - 404996..405244 (+) 249 WP_011225562.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=921664 VRA41_RS02165 WP_002945408.1 400811..401254(+) (rcrR) [Streptococcus thermophilus strain SCB0351]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=921664 VRA41_RS02165 WP_002945408.1 400811..401254(+) (rcrR) [Streptococcus thermophilus strain SCB0351]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537