Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV24_RS09580 Genome accession   NZ_AP025497
Coordinates   2120715..2122103 (-) Length   462 a.a.
NCBI ID   WP_017056505.1    Uniprot ID   A0A4U2D6J2
Organism   Vibrio kanaloae strain LMG 20539     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2115715..2127103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS09545 moaE 2116221..2116694 (-) 474 WP_046222691.1 molybdopterin synthase catalytic subunit MoaE -
  OCV24_RS09550 moaD 2116697..2116942 (-) 246 WP_017054954.1 molybdopterin synthase sulfur carrier subunit -
  OCV24_RS09555 moaC 2116939..2117418 (-) 480 WP_017054953.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV24_RS09560 moaB 2117431..2117943 (-) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  OCV24_RS09565 moaA 2118036..2119025 (-) 990 WP_017056508.1 GTP 3',8-cyclase MoaA -
  OCV24_RS09570 - 2119360..2120247 (+) 888 WP_017056507.1 YvcK family protein -
  OCV24_RS09575 luxU 2120347..2120691 (-) 345 WP_017056506.1 quorum-sensing phosphorelay protein LuxU -
  OCV24_RS09580 luxO 2120715..2122103 (-) 1389 WP_017056505.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV24_RS09585 uvrB 2122406..2124436 (-) 2031 WP_017056504.1 excinuclease ABC subunit UvrB -
  OCV24_RS09595 rsxA 2125383..2125961 (+) 579 WP_046222689.1 electron transport complex subunit RsxA -
  OCV24_RS09600 rsxB 2125964..2126557 (+) 594 WP_150877817.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51777.37 Da        Isoelectric Point: 6.5096

>NTDB_id=92155 OCV24_RS09580 WP_017056505.1 2120715..2122103(-) (luxO) [Vibrio kanaloae strain LMG 20539]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENRL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92155 OCV24_RS09580 WP_017056505.1 2120715..2122103(-) (luxO) [Vibrio kanaloae strain LMG 20539]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCAGCGTTGTATCG
CTCTTATCTGACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGATCTAATTTTGTTAGATCTGCGTCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCTGAAGTCCCCGTTATCTTCATGACGGCTCATGGCTCGATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGACCGACTCCGTATTACGGTGAATAACGCGATACGCAAAGCCACTAAACTTAAGA
ACAGCTCTGAAAATCCGGGTAATCAAAACTACCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACC
ATCGATTCTGCCGCATCAAGTAAGGCGAGTATTTTTATCACAGGTGAAAGTGGTACCGGTAAAGAAGTATGTGCAGAAGC
CATTCATGCAGCGAGTAAGCGTGGTGATAAGCCTTTCATTGCGATTAACTGCGCGGCTATCCCTAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTCAAAGGTGCCTTTACGGGCGCAGCAACCGATCGCCAAGGTGCTGCTGAACTAGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTATGCGAAATGGATCTTGAATTGCAAACCAAGCTTCTGCGTTTCATTCAAACCGGCAC
CTTCCAAAAAGTCGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGCGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATCCCTCTTCACTTGCCGCCACTGCGTGAG
CGTGGAGAAGATGTCATCGAGATCGCATACTCGTTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCTTTCGTACGCTT
TGCTCAGGAAGTGTTGGATCGCTTTAATCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTTTTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTCCCACCTCCACTGAACCAGCCGATTGAGAATCGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACTGTAAAAGATATTTTTCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGACGGTAATATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAGCCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2D6J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84

Multiple sequence alignment