Detailed information NTG0921529

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: VP461_RS07240
• Genome accession: NZ_CP142100
• Coordinates: 1581453..1582154 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain A20AB13
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1576453..1587154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP461_RS07210 (VP461_07210)	-	1576759..1577202 (-)	444	WP_001246675.1	SRPBCC family protein	-
VP461_RS07215 (VP461_07215)	tadA	1577272..1577775 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
VP461_RS07220 (VP461_07220)	-	1577782..1578906 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
VP461_RS07225 (VP461_07225)	ung	1578903..1579616 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
VP461_RS07230 (VP461_07230)	-	1579667..1580263 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
VP461_RS07235 (VP461_07235)	gspK	1580494..1581453 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
VP461_RS07240 (VP461_07240)	xcpW	1581453..1582154 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
VP461_RS07245 (VP461_07245)	xcpV	1582154..1582534 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
VP461_RS07250 (VP461_07250)	-	1582524..1583078 (-)	555	WP_000841373.1	type II secretion system protein	-
VP461_RS07255 (VP461_07255)	-	1583088..1583696 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
VP461_RS07260 (VP461_07260)	-	1583734..1584507 (-)	774	WP_000497298.1	TatD family hydrolase	-
VP461_RS07265 (VP461_07265)	-	1584525..1584866 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
VP461_RS07270 (VP461_07270)	-	1584878..1585858 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
VP461_RS07275 (VP461_07275)	kdsB	1585870..1586631 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=921529 VP461_RS07240 WP_000594589.1 1581453..1582154(-) (xcpW) [Acinetobacter baumannii strain A20AB13]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=921529 VP461_RS07240 WP_000594589.1 1581453..1582154(-) (xcpW) [Acinetobacter baumannii strain A20AB13]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996