Detailed information NTG0092151

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV24_RS06615
• Genome accession: NZ_AP025497
• Coordinates: 1418101..1419525 (-)
• Length: 474 a.a.
• NCBI ID: WP_150878499.1
• Uniprot ID: -
• Organism: Vibrio kanaloae strain LMG 20539
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1413101..1424525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV24_RS06590	-	1413706..1414359 (+)	654	WP_136979692.1	thiopurine S-methyltransferase	-
OCV24_RS06595	purT	1414477..1415652 (-)	1176	WP_137008070.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV24_RS06600	cdd	1415820..1416707 (-)	888	WP_150878497.1	cytidine deaminase	-
OCV24_RS06605	-	1417024..1417701 (-)	678	WP_046224077.1	LrgB family protein	-
OCV24_RS06610	-	1417704..1418075 (-)	372	WP_017057447.1	CidA/LrgA family protein	-
OCV24_RS06615	sbcB	1418101..1419525 (-)	1425	WP_150878499.1	exodeoxyribonuclease I	Machinery gene
OCV24_RS06620	-	1419733..1420581 (-)	849	WP_150878501.1	sterol desaturase family protein	-
OCV24_RS06625	-	1420636..1421649 (-)	1014	WP_150878503.1	DUF2804 domain-containing protein	-
OCV24_RS06630	-	1421797..1422831 (+)	1035	WP_136979702.1	AraC family transcriptional regulator	-
OCV24_RS06635	-	1422836..1423786 (-)	951	WP_150878602.1	chromosome partitioning protein ParA	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54615.96 Da
• Isoelectric Point: 4.9699

>NTDB_id=92151 OCV24_RS06615 WP_150878499.1 1418101..1419525(-) (sbcB) [Vibrio kanaloae strain LMG 20539]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITGITPQKAMTQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLDLDSEALRDRLYTKRTELAEDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSHEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCRELYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92151 OCV24_RS06615 WP_150878499.1 1418101..1419525(-) (sbcB) [Vibrio kanaloae strain LMG 20539]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAGACATGGGGCGTGAGCCCGGCAAAAGACCGTCCAAG
TCAGTTTGCGGGGGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTATTGCCAGCCTCCTGCTG
ATTATCTGCCTGCACCTGAGGCCGCATTGATCACTGGTATCACGCCACAAAAAGCAATGACTCAAGGCCTACCTGAACCT
GAGTTTATCGCTAAGATTCATGCCGAACTTGCTAAGCCAAACACCACAAGCCTTGGCTACAACAGCATCCGATTCGATGA
CGAAGTAACGAGATACACCTGTTACCGTAACTTCATTGATCCGTATGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGACGAAGGCTTCCCA
AGTTTCAAACTGGAACACCTCTCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
GACTATCGAATTAGCGAAAAAGCTAAAAGCCGCACAACCTAAGATGTTTGATTACCTCTACAATATGCGCCACAAGCGTA
AATTGAACGAGTTAGTCGACATCGTAAACATGACACCTCTAATGCACGTATCAGGCATGTTCGGCCGTGATTGTAATTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCCGTTATCGTGGTGGATTTAGCAAAAGATCCAAC
ACCTTTACTTGACCTAGATTCAGAAGCTTTACGTGACAGGCTCTATACTAAGCGCACTGAACTTGCTGAAGACGAGTTAC
CGGTACCAATCAAATTGGTTCATTTAAACAAGTGCCCTATTCTTGCGCCAGCAAAAACGCTGACCGCAGAAAACGCGGAA
ACTATTGGTATCGACCGTCAGCAATGTTTGAAAAACTTGGCACTGTTACGCGAACATCCAGAAATCCGTGAAAAATTGAT
TGGTTTGTACTCACACGAGAGAGAGTACGAGAAGAGTGACGATGTCGACACTCACCTTTACGATGGTTTCTTCTCACCAG
CCGATAAAACAGCGATGAACATCATTCGTGAAACAGACCCAAACAACTTGGCGGCTTTAGATATTACTTTTAGTGACGAA
CGAATTAAGCCTTTGTTGTTCCGTTATCGCGCTCGCCACTTTCCATGGACGCTCGACGAATCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAGCTCTATGAGAGCCGCTTAGAAGAGTACATGCTGAATCTAGAAAATCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCGATCTTAAAGGCGGTTTATCAGTACGTTGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	77.378	99.789	0.772