Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV24_RS06575 Genome accession   NZ_AP025497
Coordinates   1410212..1411393 (-) Length   393 a.a.
NCBI ID   WP_150878493.1    Uniprot ID   -
Organism   Vibrio kanaloae strain LMG 20539     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405212..1416393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS06560 - 1405662..1406555 (-) 894 WP_017057457.1 LysR family transcriptional regulator -
  OCV24_RS06565 - 1406719..1407603 (+) 885 WP_150878489.1 Vmh family MBL fold metallo-hydrolase -
  OCV24_RS06570 - 1408020..1410068 (+) 2049 WP_150878491.1 response regulator -
  OCV24_RS06575 cqsA 1410212..1411393 (-) 1182 WP_150878493.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV24_RS06580 ihfA 1412197..1412493 (+) 297 WP_150878495.1 integration host factor subunit alpha -
  OCV24_RS06585 - 1412605..1413381 (-) 777 WP_077680486.1 RelA/SpoT domain-containing protein -
  OCV24_RS06590 - 1413706..1414359 (+) 654 WP_136979692.1 thiopurine S-methyltransferase -
  OCV24_RS06595 purT 1414477..1415652 (-) 1176 WP_137008070.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44039.25 Da        Isoelectric Point: 6.9964

>NTDB_id=92150 OCV24_RS06575 WP_150878493.1 1410212..1411393(-) (cqsA) [Vibrio kanaloae strain LMG 20539]
MSNKFENKPLPSFIEERLNFYVQDLITPNKNQRHLVLGKRPKSNAVVMQSNDYLSLSHNVNIQKAHRDAISKHDDNVVMS
AIFLQDEQSKPAFETELAAYVGMETCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAYPFMHNNMN
HLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGKNGAGLVQSLGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKNSDDKRDTLFKRVKTLTTGLKQIGFNIRSESQ
IVALECGSERNTEHVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTSQDIDHVLRVCDEAFHHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92150 OCV24_RS06575 WP_150878493.1 1410212..1411393(-) (cqsA) [Vibrio kanaloae strain LMG 20539]
ATGAGTAATAAATTTGAAAATAAACCATTACCTTCCTTTATCGAAGAACGCTTGAACTTTTATGTTCAAGACCTCATTAC
CCCAAACAAAAACCAAAGGCACTTGGTATTAGGGAAACGCCCCAAGTCGAACGCCGTGGTTATGCAGAGTAATGACTACC
TATCACTATCGCATAACGTGAACATCCAAAAAGCACATAGGGATGCGATCTCAAAGCACGATGATAATGTAGTGATGTCT
GCCATATTTTTGCAAGATGAACAATCTAAGCCAGCGTTTGAAACCGAACTCGCAGCCTATGTCGGGATGGAAACCTGTTT
GCTGTCCCAATCTGGTTGGGCTGCGAATATTGGGCTGTTGCAAACTATCTGCCCACCTAATACTCCGGTGTATATCGATT
TCTTTGCACACATGTCCCTATGGGAAGGAATTCGTGCTGCTGGAGCTCATGCTTACCCGTTTATGCACAACAACATGAAT
CACCTGCGTAAACAGATCCAACGTAATGGATCAGGCGTGATTGTGGTCGACTCTGTTTATAGCACCATTGGCACTATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCTTTGGTCGTTGATGAGTCGCACTCGTTAGGTACTC
ATGGTAAAAATGGGGCGGGTTTGGTTCAATCTTTAGGGCTGACCAACAAAGTGGATTTTATTACCGTGAGTTTAGCCAAG
ACATTCGCTTATCGTGCCGGTGCCATTCTTGGTCCTAAACGGCTGTCAGAGACCCTTCCATTTGTCGCTTACCCCGCGAT
TTTCAGCTCTACCGTGCTGCCACAAGAAGTCATTCGCTTAGAAAAAACGTTAGAGGTAATCAAAAACTCTGATGATAAGC
GAGACACCTTATTCAAACGAGTCAAAACGCTCACAACAGGCCTAAAACAAATAGGCTTTAACATTCGTAGCGAGTCACAA
ATCGTGGCCTTAGAATGCGGTAGCGAAAGAAACACGGAGCATGTGCGTGACTTTCTCGAAGAGCGGAATGTGTTTGGTGC
TGTATTTTGTCGCCCTGCAACTGGAAAAAACAAGAACATCATCCGATTCTCAGTGAATGCTGACATGACTTCGCAAGATA
TAGACCACGTTCTCAGGGTATGCGATGAAGCATTTCATCACCCTGAGTTAGAGTTCATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment