Detailed information NTG0921478

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: VQ623_RS10715
• Genome accession: NZ_CP142094
• Coordinates: 2150057..2151421 (-)
• Length: 454 a.a.
• NCBI ID: WP_011276735.1
• Uniprot ID: A0A2A1KAD2
• Organism: Staphylococcus haemolyticus strain MLK17
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2151553..2152893	2150057..2151421	flank	132

Gene organization within MGE regions

Location: 2150057..2152893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VQ623_RS10715 (VQ623_10715)	radA	2150057..2151421 (-)	1365	WP_011276735.1	DNA repair protein RadA	Machinery gene
VQ623_RS10720 (VQ623_10720)	-	2151553..2152893 (-)	1341	WP_326007945.1	IS1182 family transposase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49851.15 Da
• Isoelectric Point: 7.0044

>NTDB_id=921478 VQ623_RS10715 WP_011276735.1 2150057..2151421(-) (radA) [Staphylococcus haemolyticus strain MLK17]
MAKKKVIFECMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSSAKVQKLNDIKNEVTPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQ
QAQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVHNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWQFPEGIKVVGVSTVHDALKYAFKS

Nucleotide

• Length: 1365 bp

>NTDB_id=921478 VQ623_RS10715 WP_011276735.1 2150057..2151421(-) (radA) [Staphylococcus haemolyticus strain MLK17]
TTGGCCAAAAAGAAAGTAATTTTTGAGTGTATGGCTTGCGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGGTCATGGAATCAAATGGAGGAAATTGTTGAAAAAGCTTCAAATCCTAAACACGGCGTAAAGACATCAACGTCTAGCG
CAAAAGTCCAGAAATTAAATGATATCAAGAATGAAGTGACACCGAGAGTTCAGACAGAATCAAAAGAGTTCAACCGCGTT
TTAGGCGGTGGCATTGTAAGTGGTTCTTTAGTGTTAATAGGTGGAGATCCTGGTATTGGTAAATCAACGTTATTACTGCA
AATTTGTGCATCATTGTCACAAAAATTAAATGTACTGTATATTACAGGTGAAGAATCACTAAATCAAACTAAATTACGTG
CCGATCGACTAGATGAAGATTCGAGTAATTTAAATGTGTTAGCAGAAACAGATTTAGAGGTAATACATCAAACAGTTCAG
CAAGCACAACCTGATATTTTAGTTGTGGATTCTATTCAAACAATATATCATCCTGAAATTAGTTCGGCACCTGGTTCTGT
GTCTCAAGTTAGAGAGAGTACACAGAGTTTAATGAATATTGCTAAACAAATGAATATTGCAACATTTATCGTCGGACATG
TTACAAAAGAAGGTCAAATTGCAGGACCGCGTCTATTAGAACATATGGTTGATACTGTACTGTACTTTGAGGGAGATGAG
CATCATGCTTATCGTATCTTGAGAGCGGTTAAGAACCGTTTTGGTTCTACTAATGAAATGGGCATTTTTGAAATGAAACA
AAGCGGATTAAAAGGCGTTCATAATCCTTCTGAAATGTTCTTAGAGGAACGTTCTACCAATGTACCGGGATCAACGATTG
TAGCAACTATGGAAGGCACACGACCTCTATTAATAGAAGTTCAGGCCTTAGTGACTCCTACAACATTTAATAACCCTAGA
CGTATGGCAACAGGTATAGATCATAATCGTTTGAGTTTATTAATGGCTGTATTAGAGAAAAAAGAAAACTATTTATTACA
ACAACAAGATGCATATATTAAAGTAGCTGGTGGCGTTCGATTGACAGAGCCGGCAGTTGATTTAAGTGTTATAGTAGCAA
CAGCTTCAAGTTTTAAAGATAAAGCAGTAGATGGGCTTGATTGTTATATTGGAGAAGTAGGTTTGACCGGTGAAGTGAGA
CGTGTTTCTCGAATTGAACAACGTGTTCAAGAAGCAGCTAAATTAGGCTTTGAACGCGTTATTATTCCACAGACAAATAT
CGGTGGGTGGCAATTTCCTGAAGGCATTAAAGTAGTAGGAGTGTCTACAGTACATGATGCACTAAAATATGCATTCAAAT
CGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-218)

• Subunit ChlI of Mg-chelatase (ChlI) (359-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A2A1KAD2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.427	100	0.659
radA	Streptococcus pneumoniae Rx1	60.177	99.559	0.599
radA	Streptococcus pneumoniae D39	60.177	99.559	0.599
radA	Streptococcus pneumoniae R6	60.177	99.559	0.599
radA	Streptococcus pneumoniae TIGR4	60.177	99.559	0.599
radA	Streptococcus mitis NCTC 12261	60.177	99.559	0.599
radA	Streptococcus mitis SK321	60.177	99.559	0.599