Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VQ623_RS07725 Genome accession   NZ_CP142094
Coordinates   1540155..1541021 (-) Length   288 a.a.
NCBI ID   WP_107614294.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain MLK17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1525045..1570579 1540155..1541021 within 0


Gene organization within MGE regions


Location: 1525045..1570579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ623_RS07660 (VQ623_07660) rseP 1525900..1527186 (-) 1287 WP_317956023.1 RIP metalloprotease RseP -
  VQ623_RS07665 (VQ623_07665) - 1527396..1528178 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  VQ623_RS07670 (VQ623_07670) - 1528182..1528952 (-) 771 WP_317956021.1 isoprenyl transferase -
  VQ623_RS07675 (VQ623_07675) frr 1529178..1529732 (-) 555 WP_011275941.1 ribosome recycling factor -
  VQ623_RS07680 (VQ623_07680) pyrH 1529750..1530472 (-) 723 WP_011275942.1 UMP kinase -
  VQ623_RS07685 (VQ623_07685) tsf 1530609..1531487 (-) 879 WP_011275943.1 translation elongation factor Ts -
  VQ623_RS07690 (VQ623_07690) rpsB 1531652..1532440 (-) 789 WP_317956019.1 30S ribosomal protein S2 -
  VQ623_RS07695 (VQ623_07695) codY 1532707..1533480 (-) 774 WP_011275945.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  VQ623_RS07700 (VQ623_07700) hslU 1533502..1534905 (-) 1404 WP_317956017.1 ATP-dependent protease ATPase subunit HslU -
  VQ623_RS07705 (VQ623_07705) hslV 1534965..1535510 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  VQ623_RS07710 (VQ623_07710) xerC 1535511..1536374 (-) 864 WP_267920078.1 tyrosine recombinase XerC -
  VQ623_RS07715 (VQ623_07715) trmFO 1536576..1537883 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VQ623_RS07720 (VQ623_07720) topA 1537907..1539976 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  VQ623_RS07725 (VQ623_07725) dprA 1540155..1541021 (-) 867 WP_107614294.1 DNA-processing protein DprA Machinery gene
  VQ623_RS07730 (VQ623_07730) - 1541240..1542469 (-) 1230 Protein_1486 aminoacyltransferase -
  VQ623_RS11615 - 1542500..1542757 (-) 258 Protein_1487 CHAP domain-containing protein -
  VQ623_RS11620 - 1542869..1542943 (-) 75 Protein_1488 hypothetical protein -
  VQ623_RS07740 (VQ623_07740) sucD 1543199..1544104 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  VQ623_RS07745 (VQ623_07745) sucC 1544126..1545292 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -
  VQ623_RS07750 (VQ623_07750) - 1545404..1546171 (-) 768 WP_053017079.1 ribonuclease HII -
  VQ623_RS07755 (VQ623_07755) ylqF 1546155..1547039 (-) 885 WP_107611438.1 ribosome biogenesis GTPase YlqF -
  VQ623_RS07760 (VQ623_07760) - 1547276..1549870 (+) 2595 WP_326007752.1 YfhO family protein -
  VQ623_RS07765 (VQ623_07765) - 1549872..1552481 (+) 2610 WP_107638618.1 YfhO family protein -
  VQ623_RS07770 (VQ623_07770) rplS 1552638..1552988 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  VQ623_RS07775 (VQ623_07775) trmD 1553093..1553830 (-) 738 WP_107611435.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VQ623_RS07780 (VQ623_07780) rimM 1553830..1554333 (-) 504 WP_317956007.1 ribosome maturation factor RimM -
  VQ623_RS07785 (VQ623_07785) rpsP 1554452..1554727 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  VQ623_RS07790 (VQ623_07790) ffh 1555460..1556830 (-) 1371 WP_107611433.1 signal recognition particle protein -
  VQ623_RS07795 (VQ623_07795) - 1556856..1557188 (-) 333 WP_037537868.1 putative DNA-binding protein -
  VQ623_RS07800 (VQ623_07800) ftsY 1557175..1558398 (-) 1224 WP_037557992.1 signal recognition particle-docking protein FtsY -
  VQ623_RS07805 (VQ623_07805) smc 1558395..1561964 (-) 3570 WP_317956005.1 chromosome segregation protein SMC -
  VQ623_RS07810 (VQ623_07810) rnc 1562049..1562801 (-) 753 WP_411861500.1 ribonuclease III -
  VQ623_RS07815 (VQ623_07815) - 1562872..1563105 (-) 234 WP_001830184.1 acyl carrier protein -
  VQ623_RS07820 (VQ623_07820) fabG 1563218..1563955 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  VQ623_RS07825 (VQ623_07825) fabD 1563945..1564874 (-) 930 WP_107611430.1 ACP S-malonyltransferase -
  VQ623_RS07830 (VQ623_07830) plsX 1564867..1565853 (-) 987 WP_107611429.1 phosphate acyltransferase PlsX -
  VQ623_RS07835 (VQ623_07835) fapR 1565855..1566415 (-) 561 WP_107611428.1 transcription factor FapR -
  VQ623_RS07840 (VQ623_07840) recG 1566551..1568602 (-) 2052 WP_317956001.1 ATP-dependent DNA helicase RecG -
  VQ623_RS07845 (VQ623_07845) - 1568757..1569560 (-) 804 WP_107611426.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33210.16 Da        Isoelectric Point: 9.2798

>NTDB_id=921473 VQ623_RS07725 WP_107614294.1 1540155..1541021(-) (dprA) [Staphylococcus haemolyticus strain MLK17]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQLDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLRSSNTLGVVGTRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPFTSVRRYHFPQRNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=921473 VQ623_RS07725 WP_107614294.1 1540155..1541021(-) (dprA) [Staphylococcus haemolyticus strain MLK17]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACACATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAATTAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGCTAAAAGAAATTTATGATTATCCGTTTGTCTTATTTTACCAAGGTGACCCCCG
TTTATTAAGATCCTCCAATACATTAGGTGTGGTGGGCACAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATCATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGGGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.93

98.958

0.514
  dprA Staphylococcus aureus N315

51.93

98.958

0.514