Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | VQ623_RS06345 | Genome accession | NZ_CP142094 |
| Coordinates | 1249090..1250064 (+) | Length | 324 a.a. |
| NCBI ID | WP_107612067.1 | Uniprot ID | - |
| Organism | Staphylococcus haemolyticus strain MLK17 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1244090..1255064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VQ623_RS06310 (VQ623_06310) | rpmG | 1244523..1244672 (+) | 150 | WP_011275661.1 | 50S ribosomal protein L33 | - |
| VQ623_RS06315 (VQ623_06315) | - | 1244908..1245444 (+) | 537 | WP_317955335.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| VQ623_RS06320 (VQ623_06320) | - | 1245460..1246917 (+) | 1458 | WP_317955337.1 | rhomboid family intramembrane serine protease | - |
| VQ623_RS06325 (VQ623_06325) | - | 1246901..1247104 (+) | 204 | WP_037536577.1 | YqgQ family protein | - |
| VQ623_RS06330 (VQ623_06330) | - | 1247101..1248087 (+) | 987 | WP_107612069.1 | ROK family glucokinase | - |
| VQ623_RS06335 (VQ623_06335) | - | 1248087..1248410 (+) | 324 | WP_011275666.1 | MTH1187 family thiamine-binding protein | - |
| VQ623_RS06340 (VQ623_06340) | - | 1248412..1249038 (+) | 627 | WP_317955339.1 | MBL fold metallo-hydrolase | - |
| VQ623_RS06345 (VQ623_06345) | comGA | 1249090..1250064 (+) | 975 | WP_107612067.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| VQ623_RS06350 (VQ623_06350) | comGB | 1250036..1251100 (+) | 1065 | WP_233641399.1 | competence type IV pilus assembly protein ComGB | - |
| VQ623_RS06355 (VQ623_06355) | comGC | 1251114..1251434 (+) | 321 | WP_107614543.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| VQ623_RS06360 (VQ623_06360) | comGD | 1251499..1251867 (+) | 369 | WP_326007647.1 | competence type IV pilus minor pilin ComGD | - |
| VQ623_RS06365 (VQ623_06365) | - | 1252715..1253233 (+) | 519 | WP_326007649.1 | shikimate kinase | - |
| VQ623_RS06370 (VQ623_06370) | gcvT | 1253422..1254513 (+) | 1092 | WP_037536557.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37164.13 Da Isoelectric Point: 8.2232
>NTDB_id=921467 VQ623_RS06345 WP_107612067.1 1249090..1250064(+) (comGA) [Staphylococcus haemolyticus strain MLK17]
MKLLFREIVNKAISKNASDIHFIPSVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSQQSAQSGRYTYQS
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYISSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKMQIQYFFEHEQTMPHNFNNLEQQLNLLSKEGTICEDTA
SKYF
MKLLFREIVNKAISKNASDIHFIPSVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSQQSAQSGRYTYQS
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYISSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKMQIQYFFEHEQTMPHNFNNLEQQLNLLSKEGTICEDTA
SKYF
Nucleotide
Download Length: 975 bp
>NTDB_id=921467 VQ623_RS06345 WP_107612067.1 1249090..1250064(+) (comGA) [Staphylococcus haemolyticus strain MLK17]
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGCGACATACATTTTATCCCTTCAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGCTTGGACGTTTCATCTCAACAATCCGCTCAAAGTGGTCGTTATACTTATCAATCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTATCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAATGATTTTAAACACTTAGTAAATAAAAAGCAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGCAAAAGTACTCTAATGTATCAAATGGTTCTACACGCATATAAAGAATTAAATCTTAAT
GTTATCACTATCGAAAACCCAGTTGAGCAATTACTAAAAGGCATTACCCAAATATCAATAAATAAAAAGGCAGGTATAGA
CTACATAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTTATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACCATGCATTCTACTAATTGTAGAGGTGCATTA
CTTCGGTTACTTGAGATGGGAATTTCAATTCAAGAATTAACACAATCTATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAATGCAGATACAATATTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTAGAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGCGACATACATTTTATCCCTTCAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGCTTGGACGTTTCATCTCAACAATCCGCTCAAAGTGGTCGTTATACTTATCAATCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTATCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAATGATTTTAAACACTTAGTAAATAAAAAGCAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGCAAAAGTACTCTAATGTATCAAATGGTTCTACACGCATATAAAGAATTAAATCTTAAT
GTTATCACTATCGAAAACCCAGTTGAGCAATTACTAAAAGGCATTACCCAAATATCAATAAATAAAAAGGCAGGTATAGA
CTACATAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTTATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACCATGCATTCTACTAATTGTAGAGGTGCATTA
CTTCGGTTACTTGAGATGGGAATTTCAATTCAAGAATTAACACAATCTATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAATGCAGATACAATATTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTAGAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
65.944 |
99.691 |
0.657 |
| comGA | Staphylococcus aureus N315 |
65.944 |
99.691 |
0.657 |