Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV24_RS02655 Genome accession   NZ_AP025497
Coordinates   530502..531020 (+) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio kanaloae strain LMG 20539     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 525502..536020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS02645 gshA 528248..529816 (+) 1569 WP_136997583.1 glutamate--cysteine ligase -
  OCV24_RS02650 - 529827..530477 (+) 651 WP_150878379.1 hypothetical protein -
  OCV24_RS02655 luxS 530502..531020 (+) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  OCV24_RS02660 - 531148..532419 (-) 1272 WP_017056598.1 HlyC/CorC family transporter -
  OCV24_RS02665 - 532548..533342 (-) 795 WP_017056599.1 inner membrane protein YpjD -
  OCV24_RS02670 ffh 533543..534928 (+) 1386 WP_102507341.1 signal recognition particle protein -
  OCV24_RS02675 rpsP 535140..535388 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCV24_RS02680 rimM 535413..535967 (+) 555 WP_017056602.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=92140 OCV24_RS02655 WP_017056597.1 530502..531020(+) (luxS) [Vibrio kanaloae strain LMG 20539]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92140 OCV24_RS02655 WP_017056597.1 530502..531020(+) (luxS) [Vibrio kanaloae strain LMG 20539]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCAGCCGTTCGTGTCGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACTTGCGTTTTACCGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ATACGCTAGAGCACCTATACGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGATATCTCACCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCAGACGGATGGTTGGCTGC
AATGCAAGACGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAACGCGATCATCGCTGCAGGTATTTCTGTAAACAAGAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment