Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3O59_RS06265 Genome accession   NZ_CP142084
Coordinates   1436687..1438078 (+) Length   463 a.a.
NCBI ID   WP_116904702.1    Uniprot ID   A0A3E1KTA8
Organism   Xanthomonas nasturtii strain 10053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431687..1443078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O59_RS06250 (M3O59_006240) cyoC 1433314..1433943 (+) 630 WP_181920389.1 cytochrome o ubiquinol oxidase subunit III -
  M3O59_RS06255 (M3O59_006245) cyoD 1433943..1434278 (+) 336 WP_064632257.1 cytochrome o ubiquinol oxidase subunit IV -
  M3O59_RS06260 (M3O59_006250) - 1434446..1436326 (+) 1881 WP_181920390.1 M61 family metallopeptidase -
  M3O59_RS06265 (M3O59_006255) radA 1436687..1438078 (+) 1392 WP_116904702.1 DNA repair protein RadA Machinery gene
  M3O59_RS06270 (M3O59_006260) - 1438496..1438882 (+) 387 WP_116904703.1 DUF805 domain-containing protein -
  M3O59_RS06275 (M3O59_006265) - 1439212..1440003 (-) 792 WP_064632251.1 response regulator transcription factor -
  M3O59_RS06280 (M3O59_006270) - 1440913..1442268 (+) 1356 WP_181920393.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48595.76 Da        Isoelectric Point: 7.0283

>NTDB_id=921387 M3O59_RS06265 WP_116904702.1 1436687..1438078(+) (radA) [Xanthomonas nasturtii strain 10053]
MAKAKTAYVCGECGAEYNKWQGQCTDCGVWNTLSEIVLESATPGGKASPAASRRSGWAGKAEAPKITALKDVQQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMAGSLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAET
GIENILQHASVARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPRANAPKTTSIKGMEIIAVERLSQALEAAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=921387 M3O59_RS06265 WP_116904702.1 1436687..1438078(+) (radA) [Xanthomonas nasturtii strain 10053]
ATGGCGAAGGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAGTACAACAAGTGGCAGGGGCAGTGCACCGACTG
CGGTGTCTGGAACACGCTGAGCGAAATCGTGCTCGAAAGCGCCACGCCGGGCGGCAAGGCCTCGCCTGCGGCATCGCGGC
GCAGCGGCTGGGCCGGCAAGGCCGAGGCGCCCAAGATCACCGCGCTCAAGGACGTGCAGCAGTCCGAGCAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGGCTGGTGGAAGGGGCGGTGGTGTTGATCGGCGGCGACCC
GGGTATCGGCAAGTCGACGTTGCTGCTGCAGGCGCTGGCGAGCATGGCCGGCAGTCTGCCGGTGTTGTACGTGACCGGCG
AAGAGTCGCTGGCGCAGGTCGCCGGGCGCGCGGTGCGGCTGGATCTGCCGCTGGAAGGCCTGAACGCCCTGGCCGAAACC
GGTATCGAAAACATCCTGCAGCACGCCAGCGTGGCGCGGCCCAAGCTGATCGTGGCCGATTCGGTGCAGACCTTGTGGAC
CGAATCGCTGACCGCAGCACCAGGCTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGTTACGCCAAGGAAA
CCGGCACCGCCGTGTTTCTGGTCGGCCATGTGACCAAGGAAGGCGGCATTGCCGGCCCGCGCGTGCTCGAGCACATGGTC
GATGCGGTGCTGTATTTCGAAGGCGAGAGCGGCAGCCGGTTCCGTTTGCTGCGCGCGTTCAAGAACCGCTTCGGTGCGGT
CAACGAGCTGGGCGTGTTCGCGATGGGTGAGAAGGGCCTCAAGGAGGTCTCCAATCCGTCGGCCATCTTCCTGTCCGGCG
GCAGCACCCAGCAGCCGGGCAGTTGCGTGATGGTCACCCGCGAAGGGACCCGCCCGCTGATGGTGGAGGTGCAGGCATTG
GTGGATGCCTCGCCGTTGTCCAACCCGCGTCGGGTTGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGT
GCTGCATCGGCACGGCGGCATCGTGGTGGGCGATCAGGACGTGTTCGTCAATGTGGTCGGCGGCATCCGCGTGCAGGAAA
CTGCGGCGGATTTGCCGGTGCTGCTGGCAGTGCTGTCGTCGCTACGCGACCGGCCGTTGGCCGAAAAGACCATCGCGTTC
GGCGAAGTGGGACTGTCCGGTGAAATCCGCCCGGTGCCCAATGGCGAAGACCGCCTGAAGGAAGCCGCCACGCATGGCTT
CAAGCGCGCGATCGTGCCCCGCGCCAACGCGCCCAAGACGACCAGCATCAAAGGCATGGAAATCATCGCGGTGGAGCGAT
TGAGCCAGGCACTGGAAGCGGCCGCCGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(90-228)

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1KTA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.482
  radA Streptococcus mitis NCTC 12261

43.043

99.352

0.428
  radA Streptococcus pneumoniae Rx1

43.043

99.352

0.428
  radA Streptococcus pneumoniae D39

43.043

99.352

0.428
  radA Streptococcus pneumoniae R6

43.043

99.352

0.428
  radA Streptococcus pneumoniae TIGR4

43.043

99.352

0.428
  radA Streptococcus mitis SK321

42.826

99.352

0.425