Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   AB3445_RS00290 Genome accession   NZ_CP162422
Coordinates   58032..58745 (-) Length   237 a.a.
NCBI ID   WP_341270918.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22723     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 53032..63745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3445_RS00260 (AB3445_00260) sph 53810..54634 (-) 825 Protein_48 sphingomyelin phosphodiesterase -
  AB3445_RS00265 (AB3445_00265) - 54691..55728 (-) 1038 WP_000857191.1 site-specific integrase -
  AB3445_RS00270 (AB3445_00270) - 55787..56251 (-) 465 WP_000825947.1 hypothetical protein -
  AB3445_RS00275 (AB3445_00275) - 56351..56533 (-) 183 WP_000705248.1 hypothetical protein -
  AB3445_RS00280 (AB3445_00280) - 56737..57078 (-) 342 WP_000591749.1 hypothetical protein -
  AB3445_RS00285 (AB3445_00285) - 57084..58016 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  AB3445_RS00290 (AB3445_00290) irvR 58032..58745 (-) 714 WP_341270918.1 XRE family transcriptional regulator Regulator
  AB3445_RS00295 (AB3445_00295) - 58708..58881 (+) 174 WP_001801500.1 hypothetical protein -
  AB3445_RS00300 (AB3445_00300) - 58878..59141 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  AB3445_RS00305 (AB3445_00305) - 59157..59372 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  AB3445_RS00310 (AB3445_00310) - 59361..59690 (-) 330 WP_000128907.1 hypothetical protein -
  AB3445_RS00315 (AB3445_00315) - 59741..60493 (+) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  AB3445_RS00320 (AB3445_00320) - 60509..60706 (+) 198 WP_001148862.1 hypothetical protein -
  AB3445_RS00325 (AB3445_00325) - 60693..61073 (-) 381 WP_000762521.1 DUF2513 domain-containing protein -
  AB3445_RS00330 (AB3445_00330) - 61128..61451 (+) 324 WP_001120201.1 DUF771 domain-containing protein -
  AB3445_RS00335 (AB3445_00335) - 61448..61609 (+) 162 WP_000048129.1 DUF1270 family protein -
  AB3445_RS00340 (AB3445_00340) - 61704..62006 (+) 303 WP_000165371.1 DUF2482 family protein -
  AB3445_RS00345 (AB3445_00345) - 62011..62271 (+) 261 WP_000291510.1 DUF1108 family protein -
  AB3445_RS00350 (AB3445_00350) - 62280..62543 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27076.65 Da        Isoelectric Point: 5.2154

>NTDB_id=921324 AB3445_RS00290 WP_341270918.1 58032..58745(-) (irvR) [Staphylococcus aureus strain TUM22723]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPRRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=921324 AB3445_RS00290 WP_341270918.1 58032..58745(-) (irvR) [Staphylococcus aureus strain TUM22723]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCGCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401