Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV24_RS01160 Genome accession   NZ_AP025497
Coordinates   254762..255766 (-) Length   334 a.a.
NCBI ID   WP_017055857.1    Uniprot ID   A0A2N7JD19
Organism   Vibrio kanaloae strain LMG 20539     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 249762..260766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS01130 zapB 249907..250149 (+) 243 WP_009848877.1 cell division protein ZapB -
  OCV24_RS01135 rraA 250238..250753 (-) 516 WP_017055862.1 ribonuclease E activity regulator RraA -
  OCV24_RS01140 - 250827..251744 (-) 918 WP_029626911.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV24_RS01145 hslU 251934..253274 (-) 1341 WP_017055860.1 HslU--HslV peptidase ATPase subunit -
  OCV24_RS01150 hslV 253333..253881 (-) 549 WP_017055859.1 ATP-dependent protease subunit HslV -
  OCV24_RS01155 ftsN 254106..254639 (-) 534 WP_017055858.1 cell division protein FtsN -
  OCV24_RS01160 cytR 254762..255766 (-) 1005 WP_017055857.1 DNA-binding transcriptional regulator CytR Regulator
  OCV24_RS01165 priA 256006..258207 (-) 2202 WP_077680958.1 primosomal protein N' -
  OCV24_RS01170 rpmE 258550..258768 (+) 219 WP_017055855.1 50S ribosomal protein L31 -
  OCV24_RS01175 - 259119..260408 (+) 1290 WP_017055854.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36548.06 Da        Isoelectric Point: 6.8459

>NTDB_id=92127 OCV24_RS01160 WP_017055857.1 254762..255766(-) (cytR) [Vibrio kanaloae strain LMG 20539]
MATMKDVAQLAGVSTATVSRALMTPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGTKAVRQLLALPEQPTA
IFCHNDSMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQTGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92127 OCV24_RS01160 WP_017055857.1 254762..255766(-) (cytR) [Vibrio kanaloae strain LMG 20539]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGACCCCAGAGAA
AGTCTCAGTTTCTACTCGCAAACGAGTAGAGGCAGCAGTACTTGAAGCTGGATACTCACCCAACACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATTACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCAGCTGTAGAAAATGATTACCTAGTTCTGCTTGGCGACAGTGGTCAACAGAAGAAACGTGAATCATCATT
CGTAAACTTGGTGTTCACCAAACAGGCTGATGGCATGCTACTGCTTGGCACCGACCACCCATTTGATGTCAGTAAATCTG
AACAGAAGAACTTACCACCTATGGTGATGGCATGTGAGTTTGCACCTGAACTTGAGTTGCCAACGGTACACATCGATAAC
TTGACGTCTGCATTTGAAGCCGTCAACTACCTAGCTCAGTTAGGTCATAAGCGCATCGCACAAATATCCGGCCCAACCTC
CGCCACTCTATGTAAATTCCGCCAGCAAGGCTACCAACAGGCATTGCGCCGGGCTGGTGTATCAATGAACCCAGCTTATA
GTACTGTTGGTGATTTTACCTTTGAAGCTGGAACAAAAGCCGTTCGTCAATTATTAGCACTACCGGAACAACCAACCGCA
ATTTTCTGTCATAACGATTCAATGGCAATTGGTGCTATTCAAGAAGCAAAAAAATTAGGTTTGCGTGTTCCTCAAGATCT
CTCCATTGTTGGTTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTAACGACCATTTCTCAGCCTCGTTACG
AAATCGGACGCCAAGCGATGCTGATGATGCTCGACCTACTTAAAGGTAACGATGTTCAAACAGGTTCACGCCTACTTGAA
GCTAAACTCGTGGTTCGTGGCAGTACAGCGCCACCTCGAATTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JD19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.401

0.883
  cytR Vibrio parahaemolyticus RIMD 2210633

87.087

99.701

0.868

Multiple sequence alignment