Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV56_RS19540 Genome accession   NZ_AP025493
Coordinates   770406..771500 (-) Length   364 a.a.
NCBI ID   WP_086712585.1    Uniprot ID   A0A5M9P0M4
Organism   Vibrio gigantis strain LMG 22741     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 765406..776500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS19520 - 766118..766426 (+) 309 WP_086712589.1 DUF1289 domain-containing protein -
  OCV56_RS19525 - 766543..766893 (-) 351 WP_086712588.1 HopJ type III effector protein -
  OCV56_RS19530 - 767088..767747 (+) 660 WP_086712587.1 PilZ domain-containing protein -
  OCV56_RS19535 luxQ 767833..770406 (-) 2574 WP_086712586.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV56_RS19540 luxP 770406..771500 (-) 1095 WP_086712585.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV56_RS19545 - 771809..772123 (-) 315 WP_086712584.1 GIY-YIG nuclease family protein -
  OCV56_RS19550 - 772124..772780 (-) 657 WP_086712583.1 YceH family protein -
  OCV56_RS19555 - 772837..773037 (-) 201 WP_086712582.1 hypothetical protein -
  OCV56_RS19560 - 773233..773547 (+) 315 WP_086712581.1 DUF496 family protein -
  OCV56_RS19565 - 773700..774326 (+) 627 WP_086712580.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV56_RS19570 - 774490..774726 (+) 237 WP_086712579.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41211.35 Da        Isoelectric Point: 4.9449

>NTDB_id=92124 OCV56_RS19540 WP_086712585.1 770406..771500(-) (luxP) [Vibrio gigantis strain LMG 22741]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSNFPEQKALTDKMVQAVQSHPVPLKQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLAQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLISTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKEVSQPDSKYSVLYRSEGYISDARGDTFIHEVNSDSNFALRSSFYTKSD
KESSYQAAKISIEKDKDLDFIYACATDVALGAAEAIRESGRDILVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLAGEQVPTVYSGEFEIVTKDDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92124 OCV56_RS19540 WP_086712585.1 770406..771500(-) (luxP) [Vibrio gigantis strain LMG 22741]
ATGAAACGCTTACTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGAACCCATGTCCTTAACGG
GTATTGGGAGTACCAAGATTACCTTTCTAACTTTCCTGAACAAAAAGCCTTAACCGATAAAATGGTTCAGGCCGTGCAAA
GTCACCCAGTTCCATTGAAACAAGTTCAAGATGAACCGATCACGATTTCAGTTGTGTATCCGGGTCAACAGATTTCCGAC
TATTGGGTTCGTAATATTCAGGCCTTTGAAAAGCGACTTGATAAACTCAGAATTAACTATCAGATCAATCAAGTGTTTAC
GCGAGTGAATGCGGATCTCGCTCAACAAAGTATCTCGTTACAAGAAGCCATTGAAAACAAAACGGATTACTTGATCTTTA
CGTTAGACACCACGCGCCATCGCAAGTTTATTGAGCATGTGTTGATCTCGACAGATACGAAGTTGATTCTTCAAAACATC
ACAACTCCAGTTCGTGCCTGGGCAGATAGACAGCCGTTTATGTATGTGGGGTTTGACCATGCCACCGGCAGCTTGAAACT
GGCAGACTACTTTAAAGAGGTCAGCCAGCCAGACAGTAAATATTCTGTGTTATATCGTTCAGAAGGTTATATCAGTGACG
CTCGTGGTGATACGTTCATTCATGAAGTAAATAGTGATAGTAATTTTGCCTTAAGATCTTCTTTTTACACAAAATCAGAT
AAAGAGAGTAGTTATCAGGCTGCTAAAATCAGCATAGAGAAAGATAAAGACCTAGACTTTATTTACGCATGTGCAACTGA
TGTCGCTTTGGGCGCTGCGGAAGCCATTCGTGAATCGGGAAGAGATATCTTAGTCAATGGTTGGGGCGGCGGTTCTGCTG
AGCTTGAAGCTATTGCAAGAGGAGACTTAGATGTGACGGTTATGCGTATGAATGACGACACGGGTATCGCGATGGCAGAA
GCAATTAAGTGGGATCTGGCCGGGGAGCAAGTTCCGACTGTTTACTCAGGCGAATTTGAAATTGTGACCAAAGATGATTC
CCCAGAACGCATTTCAGAACTTAAGCAGAGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9P0M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.842

100

0.632

Multiple sequence alignment